Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0472
         (353 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FV36 Cluster: Mediator of RNA polymerase II transcrip...    31   5.7  
UniRef50_A0CIM3 Cluster: Chromosome undetermined scaffold_19, wh...    31   7.5  

>UniRef50_Q6FV36 Cluster: Mediator of RNA polymerase II
           transcription subunit 5; n=1; Candida glabrata|Rep:
           Mediator of RNA polymerase II transcription subunit 5 -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 1099

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 272 IYIHLFSKTCLFVNNLKSNLPTDIFIKGLQ 183
           I IH FSK+C F  NL  NL     IK L+
Sbjct: 125 ILIHFFSKSCAFFVNLTDNLVISQLIKDLR 154


>UniRef50_A0CIM3 Cluster: Chromosome undetermined scaffold_19, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_19,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 187

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 65  IKKLNSIFFIKETVYISSNLSYKSSIKRLMIMLPLYSQN 181
           I++L+    + E  Y+S NL   + IK++ IMLP Y  +
Sbjct: 49  IQQLSFSLHLDEVEYLSLNLQSLTKIKQIQIMLPKYKNH 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,201,866
Number of Sequences: 1657284
Number of extensions: 2863062
Number of successful extensions: 5281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5280
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11514999177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)