Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0470
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    28   5.7  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    28   5.7  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   9.9  

>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 558 LAPLAKNSYTKGSIGRAFAVPMRTEHLDQASFCPFAPRDV 677
           L PLAK  Y K ++   F   M  E   + + CPF   D+
Sbjct: 502 LHPLAKAQYGKNNMKEYFLNEMEVEKSRECTDCPFKHNDL 541


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 558 LAPLAKNSYTKGSIGRAFAVPMRTEHLDQASFCPFAPRDV 677
           L PLAK  Y K ++   F   M  E   + + CPF   D+
Sbjct: 563 LHPLAKAQYGKNNMKEYFLNEMEVEKSRECTDCPFKHNDL 602


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 553  VTTGITGL----WQPSVHSTLLFDPSMSALPIIAKQNSPSV 443
            VTTG++ L    W P+  +    DP+ S  P+ A+  S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 553  VTTGITGL----WQPSVHSTLLFDPSMSALPIIAKQNSPSV 443
            VTTG++ L    W P+  +    DP+ S  P+ A+  S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
            R11A8.7d protein.
          Length = 1427

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 553  VTTGITGL----WQPSVHSTLLFDPSMSALPIIAKQNSPSV 443
            VTTG++ L    W P+  +    DP+ S  P+ A+  S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138


>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
            R11A8.7c protein.
          Length = 1405

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 553  VTTGITGL----WQPSVHSTLLFDPSMSALPIIAKQNSPSV 443
            VTTG++ L    W P+  +    DP+ S  P+ A+  S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 553  VTTGITGL----WQPSVHSTLLFDPSMSALPIIAKQNSPSV 443
            VTTG++ L    W P+  +    DP+ S  P+ A+  S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 553  VTTGITGL----WQPSVHSTLLFDPSMSALPIIAKQNSPSV 443
            VTTG++ L    W P+  +    DP+ S  P+ A+  S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 333 REEPQFRTFGSCTRPSGRWCEATIRGICLNASKAEASLA 217
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,266,805
Number of Sequences: 27780
Number of extensions: 332364
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)