Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0470
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 31 0.99
At5g18000.1 68418.m02111 transcriptional factor B3 family protei... 28 5.3
At3g03590.1 68416.m00362 SWIB complex BAF60b domain-containing p... 28 5.3
At5g66980.1 68418.m08444 transcriptional factor B3 family protei... 28 7.0
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS... 28 7.0
At1g14740.1 68414.m01762 expressed protein 28 7.0
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 27 9.2
At1g54020.2 68414.m06155 myrosinase-associated protein, putative... 27 9.2
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 9.2
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 692 LSEDRNIAWSKRAKAGLIQMFSTHRDCESTAYRSFSIR 579
LS R W RAK L+Q+ TH+ E T+Y+S +R
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 307
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 464 RNDRKSRHRRIKKQRAMNAWLPQASYPC 547
R +RKS ++ +KK+ + +W ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161
>At3g03590.1 68416.m00362 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 143
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 619 GTAKARPIDPLV*EFLARGARKVTTGITGLW 527
G K P+ P++ +FL G T I G+W
Sbjct: 63 GIFKVTPVSPVLAQFLGTGETSRTDAIKGIW 93
>At5g66980.1 68418.m08444 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 334
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 522 GCHKPVIP---VVTFLAPLAKNSYTKGSIGRAFAVPMRTEHLDQASFCPF 662
G H+ VIP + PL K ++ IGR + V +TE ++ FC F
Sbjct: 19 GSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEE-RFCVF 67
>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
/ heat shock transcription factor, putative (HSTF5)
identical to heat shock transcription factor 5 (HSF5)
SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
profile: PF00447 HSF-type DNA-binding domain
Length = 374
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 285 GRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGGSKQCD 154
G W + + +K + ++ + GKD LT+E E G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = -1
Query: 345 YCSVREEPQFRTFGSCTRP-SGRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGG 169
+ +VR F S + P SG E T+ +C N+ K SL + GK+++T S
Sbjct: 46 FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103
Query: 168 SK--QCDFTSRVSHSKRETRRRS 106
K + DF + + ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 8 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 160
+PR R LY D + + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
strong similarity to myrosinase-associated proteins
GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
[Brassica napus]; contains InterPro Entry IPR001087
Lipolytic enzyme, G-D-S-L family
Length = 372
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 520 SVHSTLLFDPSMSALPIIAKQNSPSVGLFT 431
SV LL P + L I+ QN P+VGLFT
Sbjct: 7 SVLGILLVFPLLHNLVTISGQNLPAVGLFT 36
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 236 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 96
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,903
Number of Sequences: 28952
Number of extensions: 320196
Number of successful extensions: 819
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -