Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0469
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   3.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.3  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   5.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.9  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 56  KKLIRTLLRFMKNNLFGIVFL 118
           KKL + ++RFMK + FG + L
Sbjct: 77  KKLEQFIVRFMKYHFFGTLKL 97


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -2

Query: 434 FVESYHTNYRCRLPKYTSNAI 372
           +++     Y+  LP+YT N +
Sbjct: 405 YIDDIFQEYKATLPRYTENQL 425



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 110 VFLMNATQIFVFQATEYNLNRKYRPNWQISGNHSKPNSE 226
           VF+   ++  VF      LN KY+P      N  K ++E
Sbjct: 17  VFIGKGSKKTVFDIPNDYLNDKYKPLGVSLSNRFKQDAE 55


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 47  LFYKKLIRTLLRFMKNNLF 103
           L Y K I T+L+  K+N+F
Sbjct: 85  LLYSKQIVTILKKTKSNIF 103


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 408 QVPSSKIYVKCHWVSKAKLTIVTLSLQRPSALSGIIYCRI 289
           +VP+        W +   LTI+ L    P  +  I+YC I
Sbjct: 221 KVPACHTLANTFWSALYFLTIIFLFFIIPLIILLILYCII 260


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 669 FIPPAGEIFGS 701
           +IPP G+ FG+
Sbjct: 42  YIPPGGDFFGN 52


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 669 FIPPAGEIFGS 701
           +IPP G+ FG+
Sbjct: 42  YIPPGGDFFGN 52


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 326 RCKLKVTIVNLALLTQW 376
           RCK K+  + ++++ QW
Sbjct: 13  RCKEKLNTLAISVMNQW 29


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 669 FIPPAGEIFGS 701
           +IPP G+ FG+
Sbjct: 42  YIPPGGDFFGN 52


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 669 FIPPAGEIFGS 701
           +IPP G+ FG+
Sbjct: 42  YIPPGGDFFGN 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,308
Number of Sequences: 336
Number of extensions: 3925
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)