Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0469
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.7  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   6.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.1  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   8.1  
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    25   8.1  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -1

Query: 324 PSALSGIIYCRIQNSNRLRSHWLFREL-----GRNRNYSEFGFEWFPDICQLGRYLRFKL 160
           P A+  +IY ++++   L SH+LF E      GR     +F  E  P + +L  Y +  L
Sbjct: 239 PHAIRWLIYRQLRDFINLHSHFLFFEFQHRFSGRRMKLPKFPKEVLPYLVKLRGYQKI-L 297

Query: 159 YS 154
           YS
Sbjct: 298 YS 299


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -2

Query: 527 IDFTHNF*QTAEKIVAKLLSRWMRQSFTRVRFVESYHTNYRCRLPKYTSN 378
           +DF  +F    E+ +++L   W + +   + + ES++ N  C  P    N
Sbjct: 8   LDFFVSFSALKEENISQLKVYWAQSNLVELYYGESFYINIVCSRPIVDEN 57


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 56  KKLIRTLLRFMKNNLFGIVFLMNATQIFVFQATE 157
           K   ++LL F+KN    + FL N +++F+ +  E
Sbjct: 883 KSKSQSLLSFLKNYSSDLPFLFNTSKVFINEIPE 916


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 291 IQNSNRLRSHWLFRELGRNRNYSEFGFEW 205
           + ++N+++  +LFR  G  R Y ++G EW
Sbjct: 431 VLHANKIQVPFLFR--GTLREYQQYGLEW 457


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 192  KYPETIQNRTLNNSDSVRVREIANGYVIYLNFEFDS 299
            KYPE I+++ +     V VRE     ++Y +   +S
Sbjct: 1501 KYPEFIKSQKMEEVHQVIVREFKRRNIVYKSHAMES 1536


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 620 IARFYSHVQMFNHDVFNRLIY-TCVPLCSILAIDFTHNF 507
           ++R YS    ++ +  N  I+  C+PL  + A+   HNF
Sbjct: 4   LSRSYSFYAAYHSNPVNIKIHQVCIPLLLLTALVLLHNF 42


>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 620 IARFYSHVQMFNHDVFNRLIYTCVPLC 540
           IA     V+M + D+FNRL+ TC   C
Sbjct: 18  IAMAEQEVEMMS-DIFNRLVMTCHKKC 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,018
Number of Sequences: 5004
Number of extensions: 64326
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)