Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0469
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    29   4.8  
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612...    28   8.5  

>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -2

Query: 602 HVQMFNHDVFNRLIYTCVPLCSILAIDFTHNF*QTAEKIVAKLL 471
           H++ F+  V +   YTC P+CS  A+D TH++    ++I A ++
Sbjct: 188 HMECFSEMVEHNK-YTC-PICSKTALDMTHHWALLDQEIEATIM 229


>12_02_0333 +
           17660454-17660502,17660587-17660704,17661181-17661255,
           17661341-17661412,17661606-17661643,17661758-17661791,
           17662396-17662519,17663334-17663417,17663991-17664056,
           17664110-17664316
          Length = 288

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 558 HLCTIVFYISHRFHAQFLTNG*ENCCEIAFSLDETIIHSCSI 433
           H+   +  +S+  H  + +N   +C + A  L E IIHSC I
Sbjct: 188 HILATIVDLSY-LHRSYKSNNLRSCPKEADILHEVIIHSCCI 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,119
Number of Sequences: 37544
Number of extensions: 345476
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)