Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0469
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15146| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_43041| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-10)          31   0.93 

>SB_15146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -1

Query: 462 DETIIHSCSICGIVPY*LQVPSSKIYVKCHWVSKAKLTIVTLSLQRPSALSGIIYCRIQN 283
           DET +H C    ++   + VPS   + +C + S    +   L L         ++C I N
Sbjct: 8   DETAVHGCRTARVIDC-VSVPSWPDWCQCVYASVLLKSTFKLQLAARENSLARMFCHISN 66

Query: 282 SNRLRSH 262
           ++R+ S+
Sbjct: 67  NSRIPSY 73


>SB_43041| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-10)
          Length = 234

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 267 SHWLFRELGRNRNYSEFGF--EWFPDICQLGRYLRFKLYSVAWNTNI 133
           SH  F   GR  N   FG    W P + Q G Y +  L  V W T++
Sbjct: 125 SHQHFPHFGRLNNQPAFGHIGVWAPIVSQKGEYKQVDLGRVTWITHV 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,342,802
Number of Sequences: 59808
Number of extensions: 438469
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)