Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0469
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative        31   0.57 
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    28   5.3  

>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
          Length = 233

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 549 TIVFYISHRFHAQFLTNG*ENCCEIAFSLDETIIHSCSICG 427
           T++ ++  +   +   NG EN C I   L E + + C  CG
Sbjct: 62  TLISFMHPQHELRLFVNGSENMCNICHRLVEGVYYHCETCG 102


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 390 IYVKCHWVSKAKLTIVTLSLQRPSALSGII 301
           +YVKC W+  AK     +++++P A +G++
Sbjct: 228 MYVKCGWLVGAKRVFDQMAVKKPVACTGLM 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,435
Number of Sequences: 28952
Number of extensions: 307483
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)