Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0468
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)                 29   3.8  
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 29   5.1  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         28   8.9  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
          Length = 453

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 180 KKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSD 317
           K+  ++TN+ +  I  N++N  +  INF  R     S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259


>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 159 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTR 338
           S+ L +EKK E ++ +    + N K + + +  NF +  P   S    +L ++ +S  + 
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283

Query: 339 LSLCTSATVSL 371
             L T   VSL
Sbjct: 284 GRLITRCQVSL 294


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = +3

Query: 78  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAI 257
           S++  +++  +  NS + + +     + +  +E +K E+   ++++          E++ 
Sbjct: 36  SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQ 95

Query: 258 NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 371
            F + +  T SG++ QL  DL   KTR     SA + L
Sbjct: 96  KFVNESA-TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 108 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTS 287
           ++YNS+    Y+S   K  +    K +  + N +   + N + NC+ + IN    +   S
Sbjct: 325 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 384

Query: 288 S 290
           S
Sbjct: 385 S 385



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 108 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTS 287
           ++YNS+    Y+S   K  +    K +  + N +   + N + NC+ + IN    +   S
Sbjct: 418 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 477

Query: 288 S 290
           S
Sbjct: 478 S 478


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 386  DVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYF-KILNLNVTNTWYWESALTGTAT 562
            DV        YG+G   TS  ++W+ + + + N +     +N+ + +T    S L    T
Sbjct: 859  DVPDSPPLSLYGEGPTPTSLSLTWQPVPIPQRNGIILGYTVNIRLNDTSLDNSTLLWNTT 918

Query: 563  IWPSESTASI 592
            + P  +  S+
Sbjct: 919  VLPDAAILSL 928


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 73  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 204
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,283
Number of Sequences: 59808
Number of extensions: 371909
Number of successful extensions: 1143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)