Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0467
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.42 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.9  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   6.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 575 NPPFSPTAAPYPVTIVLSPTR 637
           NPP +      PV +++SPTR
Sbjct: 225 NPPNTENNCAQPVVVIMSPTR 245


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 554 PSWAVCTNPPFSPTAAPYPVTIVLSPT 634
           P+  +C N P  P   P P+  +  PT
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPT 192


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 497 VALSIAHAVGISVRCRSFAPSWAVC 571
           V L++AHA  +++   SF   +A+C
Sbjct: 149 VELTVAHASVLTILAISFERYYAIC 173


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 497 VALSIAHAVGISVRCRSFAPSWAVC 571
           V L++AHA  +++   SF   +A+C
Sbjct: 149 VELTVAHASVLTILAISFERYYAIC 173


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 37  CAHCPLSSRETCRASCINESANAR 108
           C  CP ++++  R  CI    N R
Sbjct: 73  CYDCPYNTQDCYREDCIPGDGNKR 96


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 398 RYQAFPPGSSLVRSPVPTLPLTGY 469
           RY  +   +S++  P P +P  G+
Sbjct: 225 RYNPYLQAASMLPKPTPLVPQQGF 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,676
Number of Sequences: 336
Number of extensions: 3195
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)