Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0467
         (661 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-778|AAX52730.2|  660|Drosophila melanogaster CG33545-PA...    30   2.4  
AY071420-1|AAL49042.1|  302|Drosophila melanogaster RE50009p pro...    30   3.2  
AE014297-279|AAF52006.1|  302|Drosophila melanogaster CG2931-PA ...    30   3.2  
AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-P...    29   4.2  
AE013599-3146|AAF46686.2| 1215|Drosophila melanogaster CG4266-PA...    29   4.2  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   5.6  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   5.6  
BT030241-1|ABN49380.1|   74|Drosophila melanogaster IP18279p pro...    28   9.8  

>AE014296-778|AAX52730.2|  660|Drosophila melanogaster CG33545-PA
           protein.
          Length = 660

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +2

Query: 413 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAV-CTNPPFS 589
           P GSS + SPVP  PL    SA +P+ +V L+        + C S APS  +    PP  
Sbjct: 263 PSGSSFMPSPVPPAPLPA--SASVPAPTVPLA------TQISCPS-APSVPLPLVLPPNP 313

Query: 590 PTAAPYP 610
            T++P+P
Sbjct: 314 LTSSPHP 320


>AY071420-1|AAL49042.1|  302|Drosophila melanogaster RE50009p
           protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +2

Query: 419 GSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCTNPPFSPTA 598
           GS L   P P  P   ++S F+P+GS   S + A+  +    S AP    C      PT 
Sbjct: 57  GSRLTVPPPPMPPPPTFMSTFVPTGSGGGS-SKAMSATPVVLSSAPKLYQCRQSVHVPTV 115

Query: 599 APYP 610
           A  P
Sbjct: 116 AAAP 119


>AE014297-279|AAF52006.1|  302|Drosophila melanogaster CG2931-PA
           protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +2

Query: 419 GSSLVRSPVPTLPLTGYLSAFLPSGSVALSIAHAVGISVRCRSFAPSWAVCTNPPFSPTA 598
           GS L   P P  P   ++S F+P+GS   S + A+  +    S AP    C      PT 
Sbjct: 57  GSRLTVPPPPMPPPPTFMSTFVPTGSGGGS-SKAMSATPVVLSSAPKLYQCRQSVHVPTV 115

Query: 599 APYP 610
           A  P
Sbjct: 116 AAAP 119


>AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-PA
           protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 472 QVSGKRQGRNRRAHEGASRGK 410
           +V  KR+GRNR AH   SR K
Sbjct: 491 EVRSKRRGRNRHAHHSRSRSK 511


>AE013599-3146|AAF46686.2| 1215|Drosophila melanogaster CG4266-PA
           protein.
          Length = 1215

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 553 SERPTPN*DTYSVSYRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 410
           S  PTP+ D Y  S R   +  R   G+ +G   G +RR     SR +
Sbjct: 301 SRSPTPDRDRYKRSRRNSRSRTRSPRGRGAGGGTGNDRRRRGTRSRSR 348


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 91  ESANARGEAVCVLGALPLPRSLTRCARSFGCG 186
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 91  ESANARGEAVCVLGALPLPRSLTRCARSFGCG 186
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


>BT030241-1|ABN49380.1|   74|Drosophila melanogaster IP18279p
           protein.
          Length = 74

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 407 AFPPGSSLVRSPVPTLPLTGYLSAFLPSGS 496
           A PP  +  RS +P  P++G +++  P+GS
Sbjct: 30  AVPPAPAKQRSTLPEFPISGSVTSTAPAGS 59


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,527,182
Number of Sequences: 53049
Number of extensions: 727675
Number of successful extensions: 2364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2364
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)