Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0466
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.15
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.61
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 28 1.4
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 28 1.4
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 4.3
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 25 9.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 9.9
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 305 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 412
+++ YN+ M T++C+C+S + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.61
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 305 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 397
HN +N + + S T+ + SR+ V+ GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 10 VNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNLA 174
V+N I+D+ + ++C ++W G + +R ++ N ++ K IY + A
Sbjct: 253 VHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRRA 306
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 506 VTPRETARPLDTMVKSPVFLTSTRGSLHLSK 598
+TPRETA+ L ++ +P R SL K
Sbjct: 206 ITPRETAKELRNLIATPPCFAQARSSLTTPK 236
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 365 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 469
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 534 NGLAVSRGVTIVPSSKASLNWR--L*MKNRTSFSYLAGWKNHCSLVLS 397
NG A + ++ S+ A+++ + L K T FSY AG + CS+ +S
Sbjct: 108 NGEAKTGSTSLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVS 155
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Frame = -2
Query: 108 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYI 4
W+VL +++L+ ++ P V LHGV + VN V +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 449 VLFFIYNRQFNDALELGTIVTPRETARPLDTMVKSPVFLTSTRGSLHLSKRPKALLYVH 625
VL R F +A GT + A P + VF S RGS+H A++Y H
Sbjct: 388 VLILHLKRFFYEASG-GTQKNYKPIAYPARLSIPQNVFSPSVRGSIHPEYDLNAVVYHH 445
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -2
Query: 261 FQRRVQYACLHHRRRNSLIR-GIGCGTELQSEVVVSVNDLDIVSGHDESKV*WEVLSNNF 85
F+ +++ L ++ + I G CG + VV + LD V G DE+ + LS +
Sbjct: 1092 FRAGIKFWMLTGDKKETAINIGHSCGVIKEYSTVVVMGSLDGVEGSDETVSGGQRLSLDR 1151
Query: 84 LSVADPQLVAVLHGVPSLVN 25
DP + ++H + S +N
Sbjct: 1152 PPTNDPASL-MIHQLISCMN 1170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,036
Number of Sequences: 5004
Number of extensions: 51185
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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