Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0466
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   7.8  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   7.8  
02_05_1267 + 35342770-35343842,35344163-35344256,35344391-35344498     28   7.8  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   7.8  

>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 128 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 21
           MM L   GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 371 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELG 499
           +  Y G++A   R  + W      Y  DVL F YN++++D   +G
Sbjct: 42  KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


>02_05_1267 + 35342770-35343842,35344163-35344256,35344391-35344498
          Length = 424

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 611 VPLVV*KGVMNHE*MSGRPATSPSCPTALRSPEASRSYRAPR 486
           VPL++    M+   +S         PTAL SPEAS +   PR
Sbjct: 145 VPLLLTSRSMDPRALSAEELMDDGDPTALASPEASAAAARPR 186


>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
            2785402-2785486,2785517-2787578,2787732-2787753,
            2788157-2788327,2791473-2791517,2792558-2793874,
            2793962-2794012,2794090-2794188,2794352-2794504,
            2794554-2794571
          Length = 1789

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = -2

Query: 417  HCSLVLSALLPPYTTRSRXXXXXXXXLIFKYWLYLVLWILKYTLLFSHKVMNFQRRVQYA 238
            H   VL  L+PP +             + K+ L +  ++   T +F H +M   R     
Sbjct: 866  HHKTVLGMLVPPRSVHHLAIKGYCGIELPKWMLDIRSYLPHLTTIFLHGLMECNRLPPLG 925

Query: 237  CLHHRR 220
            CL H R
Sbjct: 926  CLPHLR 931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,931,197
Number of Sequences: 37544
Number of extensions: 339470
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)