Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0466
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14228| Best HMM Match : Zim (HMM E-Value=3.4)                       32   0.37 
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)                   30   2.0  
SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)                    28   7.9  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)                  28   7.9  

>SB_14228| Best HMM Match : Zim (HMM E-Value=3.4)
          Length = 406

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/83 (22%), Positives = 35/83 (42%)
 Frame = +2

Query: 329 LKMSTTTCNCNSRDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNRQFNDALELGTIV 508
           LK++   C   +   V Y       T ++WF    + EN++L  ++  +       G  V
Sbjct: 172 LKLALAACLMQAGKPVAYASRFLTETEQKWF----QIENELLTIVFAAERFQQYIYGKEV 227

Query: 509 TPRETARPLDTMVKSPVFLTSTR 577
                 +PL+T++  P+   S R
Sbjct: 228 EVESDQKPLETILDKPIENASPR 250


>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
          Length = 255

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 544 HRVQRPCGLPRRHDRTELQGIVELAIVDEEQDVVFV 437
           H V  PCG  +RH ++    ++  A+V     V F+
Sbjct: 105 HEVSLPCGAEKRHGKSTWTTVIRFAVVSFYAKVAFI 140


>SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)
          Length = 996

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 279 SHKVMNFQRRVQYACLHHRRRNSLIRG 199
           +HK ++    + + C+H+RR  +L+RG
Sbjct: 39  NHKKVSLSVSLMWLCIHYRRYKALLRG 65


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 111 KL*THHGRKLCQDHLQKLQPRSEAR 185
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
          Length = 445

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 476 FNDALELGTIVTPRETARPLDTMVKSPVFLTSTRGSLHLSKRP 604
           F +AL    +  PR+  RP  T  K+P   T T  +   + +P
Sbjct: 174 FMNALATAAVAAPRKRKRPATTAQKTPTATTPTTPTASTAVKP 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,587,090
Number of Sequences: 59808
Number of extensions: 399055
Number of successful extensions: 1252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)