Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0464
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0774 + 20478203-20479393                                         29   2.9  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.8  
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26...    29   5.1  
04_03_0506 + 16635334-16635520,16635639-16635856                       28   6.7  

>10_08_0774 + 20478203-20479393
          Length = 396

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 533 SSSVPRNAIVKSHCLEPPDSRGSTVSISLPDSARLASA 420
           S +   NA   S+CL PPD+ G + ++ L  SA+LA A
Sbjct: 186 SLAAQMNATAFSYCLAPPDT-GKSSALFLGASAKLAGA 222


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 70  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 177
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>02_01_0037 +
           261405-261779,261880-262065,262185-262271,262341-262420,
           262518-262599,262794-262814,263204-263249,263365-263483,
           263685-263798,263885-263959,264068-264157,264604-264713,
           264902-265160
          Length = 547

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 731 GRFINAAGTTG-FPTGKRAVSATQLM*VSSLIRHPRLYTLCFRLVCCVE 588
           G  I A G  G +P GK+ VSA QL    S +RH +   L  +LV  V+
Sbjct: 146 GHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEK--ALIIKLVDIVD 192


>04_03_0506 + 16635334-16635520,16635639-16635856
          Length = 134

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 538 VIMVIAVSCVKLLSAHNSTQHTSRKHKV*SLGCLMSELTHI----NCVALTARFPVGKP 702
           +++V+A   VK LS     +    KH+   +  + +E T +     CV L ARF V KP
Sbjct: 31  IVVVLATVDVKQLSGLKFLEAARMKHQDLQVIMMSAETTRLYTMMRCVKLAARFLVKKP 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,945,247
Number of Sequences: 37544
Number of extensions: 404177
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)