Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0461
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.0  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -2

Query: 385  TIISNEFTMKR*V*TSGCNILPRSRHYNESLILHIDSYTKTYVHSSALK*N*IDIK*FIK 206
            +II NEF+    +  +   I+  +  YN    L  D+     +H+S L  N   I   +K
Sbjct: 961  SIIKNEFSNVMPIRGARIPIIKFTGQYNIHCDLSFDNLLP--IHNSDLILNYSLIDERVK 1018

Query: 205  STA-LIRYWCRHRSFDKTSQKYIS 137
            +   L++YW  +R  DKT   + S
Sbjct: 1019 TLLMLVKYWASNRLIDKTHHAFPS 1042


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 425  WLYLGLMHIIKLYHISVILILRL 493
            WLYLGL+  ++   I +IL+  L
Sbjct: 2292 WLYLGLLDTVQTVGIGIILLQTL 2314


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 228  IQFYFN---AELWT*VLV*LSICKIRDSL*CLLLGRILHPLVQTYLFIVNSLLIMVPNNK 398
            ++FY N   + LW  +   LS   +RD      +  +L PL+++ + I   + I +P + 
Sbjct: 2737 LEFYDNLKFSSLWEVLSECLSA--LRDHTSITHVSTVLLPLIESLMVICRLVFIELPEDV 2794

Query: 399  LKHLSRLPRGF 431
             KH+S +   F
Sbjct: 2795 GKHISPILERF 2805


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,852
Number of Sequences: 5004
Number of extensions: 56845
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)