Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0461
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_42199| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       28   8.5  

>SB_47925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 415 GYLVALFRTYAYYKTIPHKCHFNLETRLSGES--SIDLWHYHKNNLKKFMCM 564
           G  +++ +T   Y+  PHK +    T + GE+  ++D + Y  + L + +C+
Sbjct: 12  GLTISIKKTKVMYQPAPHKAYSEPTTTVKGENLEAVDTFTYLCSTLSRSVCI 63


>SB_42199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 415 GYLVALFRTYAYYKTIPHKCHFNLETRLSGES--SIDLWHYHKNNLKKFMCM 564
           G  +++ +T   Y+  PHK +    T + GE+  ++D + Y  + L + +C+
Sbjct: 12  GLTISIKKTKVMYQPAPHKAYSEPTTTVKGENLEAVDTFTYLCSTLSRSVCI 63


>SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 162 IKPVKSISQNKHPQSHSELNEGGLTVQ 82
           I P+ + ++ KHP +H   N G   VQ
Sbjct: 292 ISPMTAHTEEKHPYTHDAFNSGDFVVQ 318


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 250 NYGHKFWCNYQYVKLETHYNVY 315
           NY ++++CNY  +KL  H++ +
Sbjct: 307 NYTNQYFCNYAMLKLHYHHDTF 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,204
Number of Sequences: 59808
Number of extensions: 387821
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)