Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0461
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    29   4.0  
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a...    27   9.2  

>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 590 PTYN*LKYNIHMNFLRLFLW*CHKSML--DSPERRVSRLK 477
           P Y+ L +N+  NFL+   + CH  M   +  ER VS+LK
Sbjct: 101 PIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLK 140


>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
           anther-specific protein ATA27 contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to
           anther-specific protein ATA27 (GI:2746341)  [Arabidopsis
           thaliana]
          Length = 535

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 448 YYKTIPHKCHFNLETRLSGESSIDLWHYHKNNLK 549
           Y K  PHKC+++     + + ++D +H +K ++K
Sbjct: 74  YTKKFPHKCNYH-----NADVAVDFYHRYKEDIK 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,895,163
Number of Sequences: 28952
Number of extensions: 271423
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)