Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0460
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    61   1e-10
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    55   1e-08
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   1.9  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    27   1.9  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    27   1.9  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   4.4  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   7.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.7  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    25   7.7  

>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 26/67 (38%), Positives = 38/67 (56%)
 Frame = +2

Query: 62  FQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADET 241
           F  +++     +F LN  + +D    KVN+ VGAYRD+ GKPW+LP V+K  K +    +
Sbjct: 6   FANIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQAS 65

Query: 242 LLHESFP 262
             HE  P
Sbjct: 66  FNHEYLP 72



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNK-HLKYD--T 426
           LP+ GL +F  A+  +L   +   ++  +   +Q +SGTG   + A F+   ++K+    
Sbjct: 71  LPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHTGAH 130

Query: 427 FYYSTPTWGMY 459
            Y S PTW ++
Sbjct: 131 VYISNPTWPVH 141


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = +2

Query: 71  VKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADE 238
           V  GPP  +F +   + +D    K+NLG G YRD+ GKP+VLP VR+ E +L + +
Sbjct: 43  VPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQK 98



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 259 PVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYS 438
           P+ G+  F   +  +  G+   +I   +    Q +SGTG L + A FL       T Y S
Sbjct: 105 PITGIPSFRVQATKLAYGDVYESIK-DRLVSAQSISGTGALCIAANFLASFYPSKTIYVS 163

Query: 439 TPTWG 453
            PTWG
Sbjct: 164 DPTWG 168


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 347 SVCKSCPGLVVCASAPSSSTSILNMI 424
           S C+ CP   +CASAP      L ++
Sbjct: 27  SACEGCPNQQICASAPRGEDPDLPLV 52


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 284 VMRLWLCSLVRIVLPSPLEKLSVCKSCPGLVVCASAPSSSTSILNMIHSTTPHL 445
           ++  ++CS  ++ LP+PL     C S     V     +   S LN++ +  P L
Sbjct: 393 ILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHSFLNIVINLNPAL 446


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/26 (30%), Positives = 21/26 (80%)
 Frame = +2

Query: 92  EVFLLNRLFTEDTFQNKVNLGVGAYR 169
           E+ +++++ TED  ++ +++G+G+YR
Sbjct: 136 EIIMVDQIKTEDLIESGLSIGMGSYR 161


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 284 VMRLWLCSLVRIVLPSPLEKLSVCKSCPGLVVCASAPSSSTSILNMIHSTTPHLH 448
           V+ LW   L + V PSP   LSV  + PG+    S   +  S +N +  T   L+
Sbjct: 339 VVSLW--DLDQPVNPSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNSMRETASPLN 391


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 47  QMASRFQGVKQGPPIEVFLLNRLFTEDTFQNKV 145
           ++ + F+  +Q PPI   L  R F   TFQ++V
Sbjct: 828 EVQAEFEPNEQIPPISARLRRRAFEFSTFQDEV 860


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 373  GGLRVGAEFLNKHLKYDTFYYSTPTWGMYTY 465
            GGL V AE + KHL +    +  P  G   Y
Sbjct: 1160 GGLGVMAELMGKHLTHHDLIWVVPRVGDVNY 1190


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -2

Query: 390 ADAQTTSPGQDLHTESFSSGDGRTILTKEHSHRRITKLLQT*HGKDSCSKVSSAASCFSI 211
           AD +  SPGQ +++   +SGD         S    T+LL+    K            + I
Sbjct: 159 ADYREFSPGQSVNSLKPNSGDEVPSTKSSTSSEMHTQLLKDEQKKILTPAPDVPHDVYCI 218

Query: 210 LRTMGSTHGFPFSSLYAP 157
             ++G    FP S + +P
Sbjct: 219 EPSLGRVFSFPASFVASP 236


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 373  GGLRVGAEFLNKHLKYDTFYYSTPTWGMYTY 465
            GGL V A+ + +HLK++   +  P  G   Y
Sbjct: 1165 GGLGVMAQLMAQHLKHEDLVWVVPCVGDVVY 1195


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 383 ASAPSSSTSILNMIHSTTPHLHG 451
           ASA S +T + +  HS  PH HG
Sbjct: 278 ASAASLNTPLSSNDHSLNPHAHG 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,743
Number of Sequences: 5004
Number of extensions: 71850
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)