Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0460
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934...    70   2e-12
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802...    52   4e-07
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770...    33   0.28 
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971...    31   1.1  
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640           28   6.0  
05_05_0392 + 24629528-24630442                                         28   6.0  
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200...    28   7.9  
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602...    28   7.9  

>01_06_0786 -
           31992357-31992441,31992632-31992752,31993371-31993465,
           31993595-31993716,31994217-31994354,31994564-31994727,
           31994835-31994955,31995049-31995148,31995329-31995412,
           31996082-31996143,31996246-31996317,31996447-31996506
          Length = 407

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 33/66 (50%), Positives = 38/66 (57%)
 Frame = +1

Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
           LP+ GL  F   S  ++ G DSPAI   +   VQ LSGTG LRVG EFL +H    T Y 
Sbjct: 72  LPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYI 131

Query: 436 STPTWG 453
             PTWG
Sbjct: 132 PQPTWG 137



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 28/70 (40%), Positives = 40/70 (57%)
 Frame = +2

Query: 53  ASRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAA 232
           +S F G+ Q P   +  +   + +D    KVNLGVGAYR E GKP VL +VR+ E+ L  
Sbjct: 4   SSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLIN 63

Query: 233 DETLLHESFP 262
           + + + E  P
Sbjct: 64  NPSRVKEYLP 73


>06_03_0398 -
           20379748-20379820,20379930-20380024,20380127-20380222,
           20380342-20380501,20380844-20381016,20381102-20381206,
           20381460-20381565,20381741-20381947,20383478-20383563,
           20383655-20383846
          Length = 430

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +2

Query: 44  KQMASRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQ 223
           + MAS F  V+      +  +   F  D   +KVN+GVGAYRD++GKP VL  VR+ E++
Sbjct: 27  RSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERR 86

Query: 224 LA 229
           +A
Sbjct: 87  IA 88



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +1

Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
           LP+ G  +    S+ +  GE+   I   +   VQ LSGTG  R+ A+F  + L     Y 
Sbjct: 96  LPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLPDSQIYI 155

Query: 436 STPTW 450
            TPTW
Sbjct: 156 PTPTW 160


>02_02_0198 +
           7705868-7706065,7706955-7707052,7707269-7707374,
           7707636-7707740,7707823-7707995,7708435-7708594,
           7708683-7708778,7709349-7709417,7709434-7709528,
           7709615-7709687
          Length = 390

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 361 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTW 450
           LSGTG  R+ A+F  + L     Y  TPTW
Sbjct: 68  LSGTGACRLFADFQRRFLPNSQIYIPTPTW 97


>11_03_0085 -
           9717360-9717390,9717478-9717603,9718600-9718666,
           9718770-9718831,9718904-9719094,9720133-9720268,
           9720760-9720851,9721231-9721413
          Length = 295

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 308 LVRIVLPSPLEKLSVCKSCPGLVVCASAPSSSTSI-LNMIHSTTP 439
           L+R + PSP      C + PG   C+S+PS STSI +N + ++ P
Sbjct: 14  LLRSLSPSP------CAALPGNAACSSSPSPSTSIRVNAMSASGP 52


>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
          Length = 468

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 326 PSPLEKLSVCKSCPGLVVCASAPSSSTSILNMIHSTTPHLHGVCTLI 466
           PS  + +    S   +    ++PSSS++     HST PH   V  L+
Sbjct: 236 PSRFDYIGSSASSISMTASIASPSSSSARPRAPHSTAPHARSVARLL 282


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 395 SAPTRRPPVPDKTCTPKAFPAAMAGLSSPRSIAT 294
           S P R+PPVP + C  +A P      +SP S  T
Sbjct: 217 SGPQRKPPVPPRPC-GRASPRRAQETNSPASSTT 249


>10_08_0301 -
           16619499-16619675,16619770-16619853,16619932-16620083,
           16620296-16620391,16620473-16620627,16620791-16620856,
           16620993-16621062,16621175-16621305,16622121-16622307,
           16622410-16622485
          Length = 397

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 304 LLGEDS-PAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTP-TWGMYTYTTHI 477
           L+ EDS P +AAGKA G+ V++     +  AEF +     ++     P  WG+  ++  I
Sbjct: 171 LVIEDSLPGVAAGKAAGMHVIAVPSVPKRTAEFSSADEVINSLLDVKPEKWGLPPFSDWI 230

Query: 478 D 480
           D
Sbjct: 231 D 231


>07_01_0779 +
           6020009-6020174,6022307-6022428,6022853-6022962,
           6024342-6024395,6026977-6027096,6027790-6029347
          Length = 709

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 658 LSTNPKLLNIYPSTNDNLSLTRAA 587
           LST P+L+NI  + N+N  + RAA
Sbjct: 188 LSTRPRLINIRAARNENGEIPRAA 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,982
Number of Sequences: 37544
Number of extensions: 484959
Number of successful extensions: 1363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)