Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0460
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)                68   6e-12
SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)           58   5e-09
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_27600| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.093
SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)                   29   3.5  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_31525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)                    28   6.1  
SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)             28   8.1  

>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
 Frame = +2

Query: 62  FQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLA---A 232
           F+ V   P   VF +   + +D   +K+NLGVGAYRD +GKPWVLP+V K+E QLA   A
Sbjct: 7   FKDVPLVPTDHVFHVMACYNKDKDPSKINLGVGAYRDNDGKPWVLPVVSKVETQLAQGIA 66

Query: 233 DETLLHE 253
           D TL HE
Sbjct: 67  DGTLNHE 73



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/71 (43%), Positives = 43/71 (60%)
 Frame = +1

Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
           L + GL QF +A+  +LLG D PAIA  +  G+Q +SGTG + +G +FL +     T Y 
Sbjct: 140 LGIDGLRQFSDAACKLLLGGDHPAIAQNRVCGIQSISGTGSVFLGLKFLYQFYNCKTAYI 199

Query: 436 STPTWGMYTYT 468
           S PTWG +  T
Sbjct: 200 SKPTWGNHLKT 210



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +2

Query: 164 YRDENGKPWVLPIVRKMEKQLA---ADETLLHE 253
           YRD +GKPWVLP+V K+E QLA   AD TL HE
Sbjct: 106 YRDNDGKPWVLPVVSKVETQLAQGIADGTLNHE 138



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGK 342
           L + GL QF +A+  +LLG D PAIA  +
Sbjct: 75  LGIDGLRQFSDAACKLLLGGDHPAIAQNR 103


>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/55 (47%), Positives = 37/55 (67%)
 Frame = +2

Query: 47  QMASRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRK 211
           +++S +  V+ GPP  +  +   F  DT   K+NLGVGAYRD+ GKP+VLP V+K
Sbjct: 47  RLSSWWSHVEAGPPDAILGVTEAFKRDTNPKKMNLGVGAYRDDTGKPYVLPSVKK 101


>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +2

Query: 164 YRDENGKPWVLPIVRKMEKQLA---ADETLLHE 253
           YRD +GKPWVLP+V K+E QLA   AD TL HE
Sbjct: 2   YRDNDGKPWVLPVVSKVETQLAQGIADGTLNHE 34



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGK 342
           L + GL QF +A+  +LLG D PAIA  +
Sbjct: 36  LGIDGLRQFSDAACKLLLGGDHPAIAQNR 64


>SB_27600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 893

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -2

Query: 405 VEELGADAQ--TTSPGQDLHTESFSSGDGRTILTKEHSHRRITKLLQT*HGKDSCSKVSS 232
           VE L  D Q  T +P +D+     ++GD +T+ T+E+ +     L    +G+ S +   +
Sbjct: 568 VESLTIDDQIVTITPEEDIRLSRIANGDDQTVETRENGNEERKWLT---NGESSSTPTEA 624

Query: 231 AASCFSILRTMGSTHGFPFSSLYA 160
           A   F  +RT  +   F    + A
Sbjct: 625 AEESFPFIRTQNNAFHFTIVDIVA 648


>SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 456 HTPCRCGVVECIIFKMLVEELGADAQ--TTSPGQDLHTESFSSGDGRTILTKE 304
           H  C      C++ K  VE L  D Q  T +P +D+     S+GD +T+ T+E
Sbjct: 131 HEVCNGNSPRCLLAK--VESLTIDDQIVTITPEEDIKISRISNGDDQTVETRE 181


>SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 456 HTPCRCGVVECIIFKMLVEELGADAQ--TTSPGQDLHTESFSSGDGRTILTKE 304
           H  C      C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+E
Sbjct: 212 HEVCNGNSPRCLLAK--VESLTIDDQIVTITPEEDIKLSRIANGDDQTVETRE 262


>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
          Length = 327

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 608 FKLDPGCTV*DVFGMKMMNY-LTSFHQSGALNTFMPKHXPKETLSMCVV 465
           FK DPG    D F + + +    +F     ++TF+PK        +CVV
Sbjct: 222 FKPDPGALAVDTFTLTLSSLKFYAFPPFSVISTFLPKVQQDHATGICVV 270


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 408 LVEELGADAQTTSPGQDLHTESFSSGDGRTILTKEHSHRRITKLLQT 268
           L+E    DA   S  +D H+ +   GD R I  KE   +++   +++
Sbjct: 391 LLENKTVDADVRSASRDSHSRTSEGGDKRDIRAKETGSQKVKSKIRS 437


>SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 447 CRCGVVECIIFKMLVEELGADAQ--TTSPGQDLHTESFSSGDGRTILTKEHSHRRITKLL 274
           C      C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+E+ +     LL
Sbjct: 618 CNGNSPRCLLPK--VESLTIDDQIVTITPEEDIRLSRIANGDDQTVETRENGNEERKCLL 675



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 429 ECIIFKMLVEELGADAQ--TTSPGQDLHTESFSSGDGRTILTKEHSH 295
           +C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+E+ +
Sbjct: 672 KCLLPK--VESLTIDDQIVTITPEEDIRLSRIANGDDQTVETRENGN 716


>SB_31525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -2

Query: 462 SVHTPCRCGVVECIIFKMLVEELGADAQTTSPGQDLHTESFSSGDGRTILTKE 304
           ++H  C      C++ K+    +     T +P +D+     ++GD +T+ T+E
Sbjct: 96  TLHEVCNGNSPRCLLAKVESLTIHDQIVTITPEEDIKLSRIANGDDQTVETRE 148


>SB_9042| Best HMM Match : TNFR_c6 (HMM E-Value=7.8)
          Length = 125

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 350 VCKSCPGLVVCASAPSSSTSILNMIHSTTPHLHGVC 457
           VCK C G  +C         I+ + + T+ H+H  C
Sbjct: 72  VCKDCKGKGMCGHGKQRPFCIVFLRYVTSVHMHPAC 107


>SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 456 HTPCRCGVVECIIFKMLVEELGADAQ--TTSPGQDLHTESFSSGDGRTILTK 307
           H  C      C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+
Sbjct: 420 HEVCNGNSPRCLLAK--VESLTIDDQIVTITPEEDIKLSRIANGDDQTVETR 469


>SB_21268| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=3.7)
          Length = 185

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 350 VCKSCPGLVVCASAPSSSTSILNMIHSTTPHLHGVC 457
           VCK C G  +C         I+ + + T+ H+H  C
Sbjct: 66  VCKDCKGKGMCEHGKQRPFCIVFLRYVTSVHMHPAC 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,361,425
Number of Sequences: 59808
Number of extensions: 574189
Number of successful extensions: 1263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)