Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0460
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 78 7e-15
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 71 8e-13
U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical pr... 66 2e-11
U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 59 3e-09
Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical pr... 33 0.25
AF078787-1|AAZ94737.1| 279|Caenorhabditis elegans Hypothetical ... 29 2.3
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81055-7|CAB02897.2| 445|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 9.4
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 27 9.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 9.4
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +2
Query: 56 SRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAAD 235
S F G+ PPIEVF N+++ ++T KVNL +GAYR E G+PWVLP+V + E ++A D
Sbjct: 2 SFFDGIPVAPPIEVFHKNKMYLDETAPVKVNLTIGAYRTEEGQPWVLPVVHETEVEIAND 61
Query: 236 ETLLHESFP 262
+L HE P
Sbjct: 62 TSLNHEYLP 70
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/66 (56%), Positives = 43/66 (65%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LPVLG E F A+ ++LG +SPAI ++FGVQ LSGTG LR GAEFL T Y
Sbjct: 69 LPVLGHEGFRKAATELVLGAESPAIKEERSFGVQCLSGTGALRAGAEFLASVCNMKTVYV 128
Query: 436 STPTWG 453
S PTWG
Sbjct: 129 SNPTWG 134
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/71 (49%), Positives = 45/71 (63%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP+LG + FC ++ A+LLG DS AI G++F VQ +SGTG + VGAEFL + L T Y
Sbjct: 71 LPILGHDGFCKSATALLLGNDSLAIKEGRSFSVQCISGTGAICVGAEFLAQVLSMKTIYV 130
Query: 436 STPTWGMYTYT 468
S P Y T
Sbjct: 131 SNPCCLCYNPT 141
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +2
Query: 56 SRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAAD 235
S F G+ PI+ + LF ++ K+NL + AYR E+G+PWVLP+VR++E + +
Sbjct: 4 SFFDGIHVASPIKELHTSELFQKEICPVKINLAIEAYRTEDGEPWVLPVVREIELKFPHE 63
Query: 236 ETLLHESFP 262
HE P
Sbjct: 64 PHHNHEYLP 72
>U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical
protein C14F11.1b protein.
Length = 297
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +1
Query: 262 VLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYST 441
++GL +F S + LGE+S I + F Q +SGTG LR+G+EFL+K+ K Y T
Sbjct: 84 IVGLPEFTKLSAQLALGENSDVIKNKRIFTTQSISGTGALRIGSEFLSKYAKTKVIYQPT 143
Query: 442 PTWG 453
PTWG
Sbjct: 144 PTWG 147
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +2
Query: 71 VKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAA 232
V+ GPP + + F D+ K+NLGVGAYRD+ GKP+VLP V++ E+Q+ A
Sbjct: 21 VEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQVIA 74
>U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical
protein C14F11.1a protein.
Length = 414
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +1
Query: 262 VLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYST 441
++GL +F S + LGE+S I + F Q +SGTG LR+G+EFL+K+ K Y T
Sbjct: 84 IVGLPEFTKLSAQLALGENSDVIKNKRIFTTQSISGTGALRIGSEFLSKYAKTKVIYQPT 143
Query: 442 PTWG 453
PTWG
Sbjct: 144 PTWG 147
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +2
Query: 71 VKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAA 232
V+ GPP + + F D+ K+NLGVGAYRD+ GKP+VLP V++ E+Q+ A
Sbjct: 21 VEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQVIA 74
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 58.8 bits (136), Expect = 3e-09
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1
Query: 262 VLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYST 441
+ G+ +F + + G++S I G+ F Q +SGTG LR+G +F+ K + T +Y T
Sbjct: 89 ITGVPEFAPLAAKLAFGDNSEVIRDGRVFTTQSISGTGALRIGGQFVEKFIPSKTLFYPT 148
Query: 442 PTW 450
PTW
Sbjct: 149 PTW 151
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +2
Query: 62 FQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQL 226
F+ V P + + F +DT NK+NLGVGAYRD+ GKP+VL VR+ E+Q+
Sbjct: 23 FRNVPLAPADPILGVTEAFKKDTNPNKINLGVGAYRDDQGKPFVLRAVREAEQQI 77
>Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical
protein D2030.3 protein.
Length = 508
Score = 32.7 bits (71), Expect = 0.25
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Frame = -2
Query: 480 IYVRGISVHTPCRCGVVECIIFKMLVEELGADAQTTSPG-QDLHTESFSSGDGRTILTKE 304
+Y R + V P + I+FK+++ + A AQT+ P + L E F G I
Sbjct: 82 LYTRELLVRNPQAGELHSPIVFKIILNCMDAAAQTSDPNIRGLAAELF----GLRI---- 133
Query: 303 HSHRRITKLLQT*HGKDSCSKVSSAASCFSILRTMG-STHGFPFSSLYAPTPKLTL 139
S++ +T LL T S +K+ + ++ LRT+G S+H +SL L+L
Sbjct: 134 -SNQNLTMLLNTLEVLLSATKIKNVSNDLLQLRTLGVSSHRDSLTSLLFEVLALSL 188
>AF078787-1|AAZ94737.1| 279|Caenorhabditis elegans Hypothetical
protein T17A3.2 protein.
Length = 279
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 377 PPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGRIHAVRFHLLPAV-FPSYER 201
P + + + P A + L + R D + + N+GRIHA + +L + + + E
Sbjct: 3 PKIGEPSVNPGGHEADVEVLVAGREDLRDKIYELTTNNSGRIHAEQVRILSDIQYITQET 62
Query: 200 WAVPMVFHFHLCM 162
+ + FH C+
Sbjct: 63 YFSTICFHLSQCV 75
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 389 PTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGR 255
P+ RP T T PA A S+PR++ + A SRP T R
Sbjct: 241 PSARPATTTGTATRPTRPAVPAA-SAPRALTSRAPAGPSRPTTTR 284
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 389 PTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGR 255
P+ RP T T PA A S+PR++ + A SRP T R
Sbjct: 241 PSARPATTTGTATRPTRPAVPAA-SAPRALTSRAPAGPSRPTTTR 284
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 389 PTRRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCSRPNTGR 255
P+ RP T T PA A S+PR++ + A SRP T R
Sbjct: 241 PSARPATTTGTATRPTRPAVPAA-SAPRALTSRAPAGPSRPTTTR 284
>Z81055-7|CAB02897.2| 445|Caenorhabditis elegans Hypothetical
protein F01G10.9 protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 255 DSCSKVSSAASCFSILRTMGSTHG-FPFSSLYAPTPKLTL-F*KVSSVKS 112
+SC+K++ A FSI G PF +YAP L F + S KS
Sbjct: 392 ESCAKITKLAKSFSIKDVSKWARGNCPFLQMYAPNASCELIFHFIDSCKS 441
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 371 VPDKTCTPKAFPAAMAGLSSPRSIATDALQNC 276
V ++CTP F +GL P S D Q+C
Sbjct: 1265 VTAESCTPDQFKCVSSGLCIPASWKCDGQQDC 1296
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -3
Query: 383 RRPPVPDKTCTPKAFPAAMAGLSSPRSIATDALQNCS 273
R P D+ C P PA + + P A + +CS
Sbjct: 102 RSGPSCDQQCMPLCLPACINAIQGPTECAPQCMPSCS 138
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 371 VPDKTCTPKAFPAAMAGLSSPRSIATDALQNC 276
V ++CTP F +GL P S D Q+C
Sbjct: 1265 VTAESCTPDQFKCVSSGLCIPASWKCDGQQDC 1296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093,485
Number of Sequences: 27780
Number of extensions: 419323
Number of successful extensions: 1223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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