Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0460
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   6.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   6.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +3

Query: 177 MENHGYCPSFVRWKN 221
           +++  YCP +++W N
Sbjct: 468 LQDREYCPRYIKWTN 482


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 237 SSAASCFSILRTMGSTHGFP 178
           S   + +S +R +  THGFP
Sbjct: 215 SDLRTIYSRVRNLNRTHGFP 234


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 309 KEHSHRRITKLLQT*HGKDSCSKVSSAASC 220
           +E +   + K L T  G D+C+K+ + A C
Sbjct: 104 QERAQSVMGKCLPT-SGSDNCNKIYNLAKC 132


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 309 KEHSHRRITKLLQT*HGKDSCSKVSSAASC 220
           +E +   + K L T  G D+C+K+ + A C
Sbjct: 104 QERAQSVMGKCLPT-SGSDNCNKIYNLAKC 132


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 359 SCPGLVVCASAPSSSTSILNMIH 427
           +C G +V  ++P +    LN+IH
Sbjct: 14  ACQGAIVRENSPRNLEKSLNVIH 36


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 32  NFVKKQMASRFQGVKQGPPIEVFLLNRLFTEDTF 133
           ++V +++A  FQG K+   + + +L R++  DT+
Sbjct: 60  SWVDRRLA--FQGGKETLALSISMLARIWKPDTY 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,731
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)