Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0460
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast... 74 8e-14
At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic... 72 3e-13
At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic... 70 2e-12
At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic... 70 2e-12
At2g30970.1 68415.m03777 aspartate aminotransferase, mitochondri... 58 7e-09
At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast... 54 7e-08
At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast... 54 7e-08
At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /... 28 6.6
At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containi... 27 8.8
>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
transaminase A (ASP3) (YLS4) identical to SP|P46644
Aspartate aminotransferase, chloroplast precursor (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
identical to cDNA YLS4 mRNA for aspartate
aminotransferase (ASP3), partial cds GI:13122285
Length = 449
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/66 (51%), Positives = 42/66 (63%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP++GL +F S ++LG DSPAI + V+ LSGTG LRVG EFL KH T Y
Sbjct: 114 LPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHYHQKTIYI 173
Query: 436 STPTWG 453
+ PTWG
Sbjct: 174 TQPTWG 179
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/69 (43%), Positives = 39/69 (56%)
Frame = +2
Query: 56 SRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAAD 235
S F + Q P + + + +D K+NLGVGAYR E GKP VL +VRK E+QL D
Sbjct: 47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106
Query: 236 ETLLHESFP 262
T + E P
Sbjct: 107 RTRIKEYLP 115
>At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic
isozyme 1 / transaminase A (ASP2) identical to SP|P46645
Aspartate aminotransferase, cytoplasmic isozyme 1 (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
Length = 405
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/66 (48%), Positives = 39/66 (59%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
+P++G+ F S ++LG DSPAI + VQ LSGTG LRVGAEFL H Y
Sbjct: 70 IPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHYHQSVIYI 129
Query: 436 STPTWG 453
PTWG
Sbjct: 130 PKPTWG 135
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = +2
Query: 50 MASRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLA 229
M S F V + P + + + D K+NLGVGAYR E GKP VL +VRK E+QL
Sbjct: 1 MDSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLV 60
Query: 230 ADETLLHESFP 262
D + + E P
Sbjct: 61 NDPSRVKEYIP 71
>At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 405
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/66 (48%), Positives = 40/66 (60%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP+ GL +F S ++LG+DSPA+ + Q LSGTG LRVGAEFL H K +
Sbjct: 70 LPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATHNKESVIFV 129
Query: 436 STPTWG 453
PTWG
Sbjct: 130 PNPTWG 135
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +2
Query: 122 EDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHESFP 262
+D K+NL G YR E GKP VL +VR+ E+QLA D + E P
Sbjct: 25 DDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLANDLSRDKEYLP 71
>At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 403
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/66 (48%), Positives = 40/66 (60%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP+ GL +F S ++LG+DSPA+ + Q LSGTG LRVGAEFL H K +
Sbjct: 68 LPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATHNKESVIFV 127
Query: 436 STPTWG 453
PTWG
Sbjct: 128 PNPTWG 133
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 122 EDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAAD 235
+D K+NL G YR E GKP VL +VR+ E+QLA D
Sbjct: 25 DDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLAND 62
>At2g30970.1 68415.m03777 aspartate aminotransferase, mitochondrial
/ transaminase A (ASP1) identical to SP|P46643 Aspartate
aminotransferase, mitochondrial precursor (EC 2.6.1.1)
(Transaminase A) {Arabidopsis thaliana}
Length = 430
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = +2
Query: 44 KQMASRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQ 223
+ M+S ++ V+ P + + F D KVN+GVGAYRD+NGKP VL VR+ EK+
Sbjct: 27 RSMSSWWKSVEPAPKDPILGVTEAFLADPSPEKVNVGVGAYRDDNGKPVVLECVREAEKR 86
Query: 224 LA 229
LA
Sbjct: 87 LA 88
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP+ G + + ++ + G++S I + VQ LSGTG R+ A+F + Y
Sbjct: 96 LPMGGSAKMVDLTLKLAYGDNSEFIKDKRIAAVQTLSGTGACRLFADFQKRFSPGSQIYI 155
Query: 436 STPTW 450
PTW
Sbjct: 156 PVPTW 160
>At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast /
transaminase A (ASP5) (AAT1) nearly identical to
SP|P46248 Aspartate aminotransferase, chloroplast
precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
thaliana}
Length = 453
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +2
Query: 56 SRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKME 217
SRF+G+ PP + ++ F DT K+NLGVGAYR E +P+VL +V+K E
Sbjct: 51 SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAE 104
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP+ GL F A+ +L G P I + +Q LSGTG LR+ A + ++
Sbjct: 117 LPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKVVI 176
Query: 436 STPTWG 453
S+PTWG
Sbjct: 177 SSPTWG 182
>At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast /
transaminase A (ASP5) (AAT1) nearly identical to
SP|P46248 Aspartate aminotransferase, chloroplast
precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
thaliana}
Length = 453
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +2
Query: 56 SRFQGVKQGPPIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKME 217
SRF+G+ PP + ++ F DT K+NLGVGAYR E +P+VL +V+K E
Sbjct: 51 SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAE 104
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 256 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 435
LP+ GL F A+ +L G P I + +Q LSGTG LR+ A + ++
Sbjct: 117 LPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKVVI 176
Query: 436 STPTWG 453
S+PTWG
Sbjct: 177 SSPTWG 182
>At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 417
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 567 NEDDELSNKFPPVWCT*HIHAKTLX*RNFIYV 472
N D LSN FP + C KT+ N +Y+
Sbjct: 276 NTPDSLSNYFPTILCNTDTFKKTIMNNNLLYL 307
>At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 866
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = -2
Query: 288 ITKLLQT*HGKDSCSKVSSAASCFSILRTMGSTHGFPFSSLYAPTPKLT----LF*KVSS 121
+ +L + ++ SKV S A S + ++G G F +++ L +F K+S
Sbjct: 100 LVRLCEWKRAQEEGSKVYSIA--LSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSE 157
Query: 120 VKSLFNKNTSIGGPCLTPWNREAICFFTK-FYTGLIKP 10
++LF+ N +GG + EA+C + + + G +KP
Sbjct: 158 -RNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKP 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,461
Number of Sequences: 28952
Number of extensions: 384595
Number of successful extensions: 971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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