Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0457
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.077
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   0.94 
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   1.6  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.8  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = -2

Query: 341 CTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSPTYATPLMSPSNARLESS 162
           CT+ T   + +  I    + P+ +   T   +F +   +  S + ++   SPS++  +SS
Sbjct: 114 CTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSS 173

Query: 161 STGSSFPADS 132
           S+  S  + S
Sbjct: 174 SSSKSSSSSS 183


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
 Frame = -2

Query: 434 PPRSNSPPGSVLDRITREF*TATSVSDTSPLCTLG--TKHRAPADIIDRAPLPPNRVSNE 261
           P   N    +  +++ R+  ++ +  DT P  + G     +    +++ +PLP     + 
Sbjct: 553 PELPNQENKTTNEKVYRKPLSSQNTFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDR 612

Query: 260 TMK*WFFSDDRAKRSPTYATPLMSPSNARLESSSTGSSFPADSPKPVPLAVVSLD 96
           ++     +   +  +PT A+ L  PS+A L SS   +    +SP+      V+LD
Sbjct: 613 SL-----NVTPSSSTPTPASVLAPPSSASLSSSKDANRSVPESPRREKKNRVTLD 662


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 230 RAKRSPTYATPLMSPSNARLESSSTGSSFPADSPKPVPLAVVSLD 96
           R +RS + AT L SPS ++  SS+TG  + +        +V S D
Sbjct: 306 RPRRSVSLATGLNSPSVSKPPSSATGPLYHSPQSSLTNSSVASAD 350


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 201 CSISGRSFRAIVAEKPLLHCFITY 272
           C +  R +RA VA+  +L+  ITY
Sbjct: 99  CILDSREYRAQVADAQILNLAITY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,945
Number of Sequences: 5004
Number of extensions: 42563
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)