Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0457
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  MPRHLISDAHEWINEIPTVPIYYLAIPQ 112
           +P++  S A   I  +P +P+Y + +PQ
Sbjct: 773 VPQNTNSQAIPRIPILPMIPVYCVPVPQ 800


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 459 PALFFDRCTAPVKLPAWQCPRPDHAGVL 376
           PA+ + R     ++P  +CP  +H G L
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPFTEHLGYL 207


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 206 ATPLMSPSNARLESSSTGSSFP 141
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,872
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)