Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0457
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   1.8  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    29   2.4  
At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    28   3.2  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    28   4.2  
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    27   5.6  
At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50...    27   5.6  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   7.4  
At3g62370.1 68416.m07006 expressed protein                             27   9.8  
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    27   9.8  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   9.8  
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    27   9.8  

>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 212 TYATPLMSPSNARLESSSTGSS--FPADSP 129
           T+  P +SPS+  + SSSTG S  FP  +P
Sbjct: 433 TFNLPALSPSSPEMVSSSTGQSSLFPPSAP 462


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 218 SPTYATPLMSPSNARLESSSTGSSFPADSPK-PVPLA 111
           SPT +  + SP+ A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 421 TPRLAVSSTGSRGSFKRRRAFPTRHHSA 338
           TPR+A +S  S G F   R F  RH SA
Sbjct: 44  TPRVAHTSMSSGGDFPDDRFFHARHQSA 71


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 449 SLTD-VPPRSNSPPGSVLDRITREF*TATSVSDTSPLCTLGTKHR 318
           S+TD V  RS++ PGS L R+  +  T  +   T+P  +LGT+ R
Sbjct: 545 SVTDPVMRRSSTSPGSGLIRMKDKQETELTTKKTAPKKSLGTRGR 589


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 215 PTYATPLMSPSNARLESSSTGSSFPADSPKPVP 117
           P    P  SP + R    S GSS  + SP P+P
Sbjct: 40  PQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72


>At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50699
           Thaumatin-like protein precursor {Arabidopsis thaliana};
           strong similarity to pathogenesis-related group 5
           protein GI:2749943 from [Brassica rapa]
          Length = 243

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 SGRGHCQAGSLTGAVHLSKNNAGVLRPA 475
           SGRGHC  G   G+  LS N AG   PA
Sbjct: 82  SGRGHCATGDCGGS--LSCNGAGGEPPA 107


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 338  TLGTKHRAPADIIDRAPLP 282
            T+G+ HR+ AD ++ +PLP
Sbjct: 972  TIGSDHRSNADSVEHSPLP 990


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 396 PDHAGVLNGDERFRHVTTLHAWN 328
           P   G  NG +RF H+  ++AWN
Sbjct: 171 PIDNGEGNGGDRFGHLVDIYAWN 193


>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 233 DRAKRSPTYATPLMSPSNARLESSSTGSSFPAD 135
           D    +P YA PL S S A    +   S FP D
Sbjct: 48  DPEHSNPRYANPLASSSEAGSSGNGMVSKFPVD 80


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 245 FFSDDRAKRSPTYATPLMSPS-NARLESSSTGSSFPADSPKPVPLA 111
           F +   +  SP+ ++P +SPS  +   SS+  SS    SP P+ L+
Sbjct: 19  FITTSSSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLS 64


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 230 RAKRSPTYATPLMSPSN-ARLESSSTGSSFPADSPKPVPLAVVS 102
           R+  + ++++P+++ S+  +  SSST SS  A SP P P   +S
Sbjct: 188 RSSPAVSHSSPVVAASSPVKAVSSSTASSPRAASPSPSPSPSIS 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,320,816
Number of Sequences: 28952
Number of extensions: 243429
Number of successful extensions: 760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)