Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0456
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
07_03_0846 - 21983581-21986055 29 3.0
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 29 5.2
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 28 6.9
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 28 6.9
09_04_0407 + 17345382-17345579,17345711-17346235 28 9.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.1
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 28 9.1
01_06_1777 + 39818212-39819696 28 9.1
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 234 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 100
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 92 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 241
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 28.7 bits (61), Expect = 5.2
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = +2
Query: 20 RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 190
RH L ++RS D KT ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 191 GSTVSISLPDSARLASALEAFSIIPRMVASHHRPL-GRVHEPNV 319
GSTVSI+LP ++ S+ A I + RPL GR P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -2
Query: 321 RTFGSCTRPSGRWCEATIRGIMLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 154
R GS RP C A I+ + + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 153 SRV 145
R+
Sbjct: 146 RRL 148
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 592 YKEFLARG-ARKVTTGITGLWQPSVHSDVLFD 500
YK F A G RKV GIT + PS+ D+ FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 286 VVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAP 188
+ + YHP+ A +S S IR+ YAHC P
Sbjct: 4 LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 243 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 70
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 69 TRASR 55
TRA+R
Sbjct: 64 TRAAR 68
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 342 VREEPQFRTFGSCTRPSGRWCEATIRGIMLNAS-KAEASLAESGKDMLTVEPRESGGSKQ 166
+ P G RP+ +++IRGI+ S KA++SL + + +L + S +Q
Sbjct: 60 ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119
Query: 165 CDFTSRVSHS 136
T+ S S
Sbjct: 120 VKATTSRSFS 129
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 185 SRGSTVSISLPDSARLASALEAFSIIPRMVASHHRP-LGRVHEPNVRNCGSSRT 343
+R T SI + + ++A I+ RMV HHRP G + C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,307,548
Number of Sequences: 37544
Number of extensions: 453201
Number of successful extensions: 1178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -