Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0455
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0622 - 4625246-4627759                                           29   2.1  
06_03_1412 + 29993566-29993873,29993960-29994583,29994665-299948...    27   6.5  
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215     27   6.5  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    27   8.7  

>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 408 PITLPLYPQAMR*PEGSTVLDSVKALLY 325
           P+TLPLYPQ+M   + ST  D  +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423


>06_03_1412 +
           29993566-29993873,29993960-29994583,29994665-29994800,
           29995108-29995196,29995299-29995413,29995565-29995628,
           29995711-29995782,29995906-29996153
          Length = 551

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 344 LSRTVEPSGHR-MAWGYNGRVIGSPEHYA 427
           + R  E  GH  ++W     VIGSPE+Y+
Sbjct: 39  VQRWAEERGHAGVSWPAGAEVIGSPEYYS 67


>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
          Length = 376

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 499 FIAAHSHWFVVETL---YYNLESLYTPSVMFGTSDYSAVVSPGH 377
           F  A + W +++ L   + NL+ L+   V+ G S  +A+ +P H
Sbjct: 294 FATAATDWSILDKLLASHQNLDQLFQGRVIAGASSPAAMAAPSH 337


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 57  DDGRPAYGD--GKDK--TSPRVSWKLIALWENNKVY 152
           DDGR  +G+  G ++   SP  SW L +LW+   V+
Sbjct: 233 DDGRWRHGEWRGAERFLASPPASWALASLWDCGGVF 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,440
Number of Sequences: 37544
Number of extensions: 225596
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)