Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0455
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)                    29   2.9  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               27   8.9  

>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
          Length = 734

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 417 SGLPITLPLYPQAMR*PEGSTVLDSVKALLYSRL*M*NKTSLS 289
           SGLP++LP+ P+A    +G  V +S+  ++ S      KTS S
Sbjct: 88  SGLPVSLPIAPEASG-DDGKEVFESLMEIVSSNCKESQKTSAS 129


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 33  TLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWE------NNKVYFKILNTERNQYLVL 194
           +LS  ++ ++ R  Y   K K     +WK  +LWE      N+K Y +    E  Q LV+
Sbjct: 504 SLSLRIKSENSREFYQSLKGKLQ---TWKCKSLWELLDNRANHKDYDRGTTCEHLQVLVI 560

Query: 195 GVG 203
           G G
Sbjct: 561 GAG 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,618
Number of Sequences: 59808
Number of extensions: 259944
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)