Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0455
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.79 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.79 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.79 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   0.79 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.7  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQRQSET 21
           LP DS   L L V +  S  V LN++A+    T
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTT 250


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQRQSET 21
           LP DS   L L V +  S  V LN++A+    T
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTT 250


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQRQSET 21
           LP DS   L L V +  S  V LN++A+    T
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTT 250


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQRQSET 21
           LP DS   L L V +  S  V LN++A+    T
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTT 318


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQ 36
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQ 36
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQ 36
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 119 LPADSRACLVLAVAVGRSAIVALNIIAQ 36
           LP DS   L L V +  S  V LN++A+
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAE 313


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 123 IALWEN--NKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDS 254
           IA W +  N++    L+TE+    +    T W   HM+   +++DS
Sbjct: 177 IASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDS 222


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 63  GRPAYGDGKDKTSPRVS 113
           G P  GDG  + SP+ S
Sbjct: 333 GTPGSGDGDTEISPQTS 349


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 156 KILNTERNQYLVLGVGTNWN 215
           ++ NT+RN+YL+     N N
Sbjct: 366 RVNNTQRNEYLLALSDRNQN 385


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 412 TSDYSAVVSPGHAVTRGL 359
           T +YS     GHA+ +GL
Sbjct: 260 TYNYSMYWGQGHAILKGL 277


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 503 FIYCCSFSLVRGRNFIL*LRKPLYPKRNVRDF 408
           FI+    SLVR R F + L K L   R   +F
Sbjct: 22  FIFLYFNSLVRFRRFTIELDKVLESPRGKYEF 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,213
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)