Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0452
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.2  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.0  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   6.8  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   9.0  

>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -2

Query: 631 KNVENHNVCPF-EVFLMSLCNIRNNMLTVKLLLKHSY--ALNSTLIADLVTLWNYLTRQ 464
           K     +  PF +   +S C++ +++L+ KL  K+SY  +L  T   D++   N L  Q
Sbjct: 34  KEASERSCFPFLDTETISSCDLSDDVLSPKLFAKNSYRCSLKETKCIDVIVSHNSLAPQ 92


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -1

Query: 755 LHNIHTVNLCILLNLSTNILFLI--LTRFLNLKF-MKFLYH 642
           LH +     C  L+L +++LFL+  +TR+LNL +  K LY+
Sbjct: 20  LHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYY 60


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 589  LMSLCNIRNNMLTVKLLLKHSYALNSTLIADLV 491
            L++LCN R N  +VK+ LK  + L+     DLV
Sbjct: 1986 LINLCNTRINSKSVKMSLKDHFRLSFDDPVDLV 2018


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 673 KNLVKIRNKMFVDKFSRMHRFTV*MLWR 756
           K ++K R+ +   KF R HRF +   W+
Sbjct: 261 KPIIKNRDVVLSGKFLRFHRFNIPGFWK 288


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 481 SKVLPGQQSESS*EHKNA*VITSQLTYYYVYCTMTLKI---LQKGTHCGSLH 627
           S + PG QSESS  H    ++T+    Y ++ T+ + I   +  GTH  + H
Sbjct: 128 SVIAPGYQSESSPPHIRGAIVTT----YQLFITLGIFIAACINMGTHKYTTH 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,317
Number of Sequences: 5004
Number of extensions: 63294
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)