Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0452
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687...    30   1.8  
06_01_0144 + 1089090-1091390                                           29   4.1  

>06_01_0895 +
           6877386-6878475,6878577-6878838,6878932-6879017,
           6879117-6879274,6879554-6879630,6879719-6879785
          Length = 579

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 619 NHNVCPFEVFLMSLCNIR-NNMLTVKLLLKHSYALNSTLIADLVTLWNYLTRQVKSGWGI 443
           N  V  F V L+S   I  NN  T+ L    +  L   ++  L+TLW++L+R+    W I
Sbjct: 30  NRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTI 89


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 595 VFLMSLCNIRNNMLTVKLLLKHSYALNSTLIADLVTLWNYLTRQVKSGWGIVSIGHCVL 419
           V  + LC   N +   K L   +YA++S +++    LW  + R     + IV +  C L
Sbjct: 382 VMTIVLCGNGNVLYAFKSLTNDNYAVSSGILSLTKCLWKNVVRSPLVFFSIVDVSICYL 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,933
Number of Sequences: 37544
Number of extensions: 311477
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)