Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0452
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein ...    30   4.0  

>AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein
           protein.
          Length = 951

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 39  SHYKNLTILYIGKHFSPYFKLEENRNKNRKLNISLQLNTF 158
           +HYKN  +   G+ FSP  +++E++ + R    S  LN F
Sbjct: 242 AHYKNANVSNSGEIFSPQIQIDEHKQEERP---STTLNAF 278


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,431,981
Number of Sequences: 53049
Number of extensions: 594294
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)