Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0452
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50900.1 68418.m06310 armadillo/beta-catenin repeat family pr...    29   2.6  
At1g16390.1 68414.m01960 organic cation transporter-related low ...    29   4.5  
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    28   7.9  

>At5g50900.1 68418.m06310 armadillo/beta-catenin repeat family
           protein armadillo/beta-catenin-like repeats,
           Pfam:PF00514
          Length = 555

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -2

Query: 610 VCPFEVFLMSLCNIRNNMLTVKLLLKHSYALNS--TLIADLVTLWNYLTRQVKSGWGIVS 437
           V P  V L+  C++     TV ++ + S   +S   LIA+ ++L N+L R ++SG G   
Sbjct: 187 VVPVLVRLLDSCSLVMKEKTVAVISRISMVESSKHVLIAEGLSLLNHLLRVLESGSGFAK 246

Query: 436 IGHCV 422
              CV
Sbjct: 247 EKACV 251


>At1g16390.1 68414.m01960 organic cation transporter-related low
           similarity to Organic cation/carnitine transporter 2
           (Solute carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) from {Homo
           sapiens} SP|O76082, {Rattus norvegicus} SP|O70594;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 518

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 568 RNNMLTVKLLLKHSYALNSTLIADLVTLWNYLTRQVKSGWGIVSIGHCVL 419
           R NML +  L+    +L+S L A   ++W Y   +  +G G  +IG C L
Sbjct: 149 RKNMLLLSCLIM---SLSSMLTAFSTSIWVYAFLRFLNGCGRATIGTCAL 195


>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 270 NMHIFSSLFTSDVFLFFKNLLYAL 341
           N   F  L  S + LFF NLLYAL
Sbjct: 313 NKSYFKPLIFSSIVLFFGNLLYAL 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,988,422
Number of Sequences: 28952
Number of extensions: 290042
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)