Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0450
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    28   1.5  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.0  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   6.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.0  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 659 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILSTGTASA 495
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T  A+A
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAA 203


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 436 FRAIVAEKPLLSLFHYLLGWAEAVPVD 516
           F++    +P   LFHYL G+    P+D
Sbjct: 312 FKSSQKHQPRNWLFHYLFGFGSTEPID 338


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -3

Query: 573 SATSPLCTLGTKHRAPADIIDRHRFRPTE*VMKQ*K*WFFSDDRAKRSPTYATPLMSPYN 394
           S  +PL  LG     P D++ +HR    E  +   K   FS    +   TY  P MS   
Sbjct: 247 SGRAPLHLLGVSMNQPIDVVVQHRM--DEDYVAPFK--PFSGKGQRLGSTYMQPRMSQMP 302

Query: 393 ARL-ESSSTGSSFP 355
             L   +ST SS P
Sbjct: 303 GGLYTDTSTSSSVP 316


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 241 GYLKRVIVTPAVYPRLLEFLHVDIQST 161
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,510
Number of Sequences: 5004
Number of extensions: 57179
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)