Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0450
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 73  WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 204
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 73  WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 204
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 456  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 337
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 456  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 337
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 453 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 337
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


>AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical
           protein W02F12.3 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 679 RTLRYSLTDVPPQSNSPPGSVLEPDHAG 596
           R+ R +  DVP  S +PPGS   P  AG
Sbjct: 40  RSARMAGDDVPSTSGAPPGSSSAPTPAG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,297
Number of Sequences: 27780
Number of extensions: 335953
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)