Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0449
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.43 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 41  GTPHQETARKVVHLVNYTHTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGW 220
           G P QE     V  +N   +  PRN+    +  T       +A+L+  P  +A  ++ GW
Sbjct: 11  GAPPQEMPTWFVRWLN---SQQPRNVPNFAAPSTSTAVQRPQAILQVRPSTSAAADVDGW 67

Query: 221 R 223
           +
Sbjct: 68  Q 68


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 672 VYLAIEGSGLQCH*GYREYIFTITLSFNVKKIFVLIKHMYLVRKKFEL 529
           VYLAI  +GL       +    +TLS + KK ++L + + + +  +EL
Sbjct: 309 VYLAIVFNGLFTEEDVADVPINVTLSLDEKK-YILQEVVRVKKPHYEL 355


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -1

Query: 367 WKTRRLFARKPTVAQSSPAPRYRPRIWLNAPSKFW 263
           W T  ++   P     SP P   P    + PS F+
Sbjct: 188 WHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFY 222


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -1

Query: 367 WKTRRLFARKPTVAQSSPAPRYRPRIWLNAPSKFW 263
           W T  ++   P     SP P   P    + PS F+
Sbjct: 80  WHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFY 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,452
Number of Sequences: 336
Number of extensions: 3599
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)