Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0449
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    29   0.81 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.3  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   4.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   5.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.7  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   10.0 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   10.0 
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   10.0 
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    25   10.0 
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   10.0 
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   10.0 

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 331 VAQSSPAPRYRPRIWLNAPSKFWM 260
           ++QSSP+P   P  W N  +  W+
Sbjct: 126 ISQSSPSPSLNPESWTNFANMLWL 149


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 259  TSKTY-LEHLAIFLAGNEEREKIAPRSAYEQRDDVSSING 375
            T +T+ +E++A +LA   ER  +AP       DD+  + G
Sbjct: 963  TIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEG 1002


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 141 RSICRIQQRHYSSLYPWRRQSLK 209
           +S+ RI++R Y+S  PW   S++
Sbjct: 335 KSLLRIRERRYASFIPWGPASIQ 357


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 582 KIFVLIKHMYLVRKKFELCCNLKFHPFSSVNILI 481
           KI  L++ +YL+RKK     ++ F  F+S+  LI
Sbjct: 793 KIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLI 826


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
 Frame = +2

Query: 98   TDLPRNIRQGMSIVTKHLSYTAE----ALLKSVPV--ETAI-TEIKGWRSKLEVLLQQLR 256
            +DL R++   +S V  ++S  AE    + +KS P+  +TA  +EIKG+R ++++ +  L+
Sbjct: 1108 SDLKRDL-SALSTVLSNVSAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLK 1166

Query: 257  P 259
            P
Sbjct: 1167 P 1167


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = +2

Query: 104 LPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWRSKLEVLLQQLRPHPKLTWSI 283
           L R     +++  + LS  AEA +  +P   AI       + LE  + +   H  LT S+
Sbjct: 20  LSRRKENNITVACRTLS-KAEAFINGIPNSKAIALDVNDEAALEKAVSE---HD-LTISL 74

Query: 284 *PYSWPVTRSGRRLRHGR 337
            PY++  T     ++HG+
Sbjct: 75  IPYTYHATVMKAAIKHGK 92


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 149 NAS*QSTCLDGCFLEGLCVYS*RDARPFLLFPGEEYHQLFKSY 21
           N+S  +  L GCF      +  +DA  F+   G++    F+S+
Sbjct: 202 NSSSLANYLHGCFYHNTLSHPYQDALKFIYEIGDDLEDTFRSF 244


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -1

Query: 133 RHALTDVSWKVCVCIVDEMHDL--SCCFLVRSTISSSRV 23
           R+AL +++ K  +CI+DE H+L  + C +  S+IS  +V
Sbjct: 347 RNAL-NLTLKDNICIIDEAHNLIDAICSMHSSSISFRQV 384


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 323 IFSRSSLPAKNMAKCSK*VLDVAATAAA 240
           +FS  SLP   +AK    V ++AAT+ A
Sbjct: 224 VFSAHSLPMSQVAKGDPYVYEIAATSQA 251


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 618 IPDNLSGTVVPIPRLQDKP 674
           + DN+SG  VPI +  D+P
Sbjct: 478 LDDNISGEAVPISKKNDEP 496


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 420 LLQAFTNANTLKLIDTVN 367
           +L +FTN++TLKL D +N
Sbjct: 254 ILSSFTNSSTLKLNDHLN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,372
Number of Sequences: 5004
Number of extensions: 60210
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)