Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0449
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057...    32   0.48 
03_05_0615 + 26137785-26138593,26139307-26141368                       31   0.84 
12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179     28   7.8  
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    28   7.8  

>07_01_1089 +
           10004773-10004831,10004924-10005033,10005631-10005749,
           10005833-10005930,10006834-10006921,10006993-10007127,
           10007211-10007313,10007506-10007618,10007821-10007868
          Length = 290

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +2

Query: 50  HQETARKVVHLVN--YTHTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWR 223
           + +TA +  HL N  +    LPRN  + M ++ KHL +  + L+    ++  +T++  +R
Sbjct: 62  YMKTAERA-HLPNKLWERVKLPRNYEKAMEVINKHLEFWPKLLVHK--IKQRLTKMTQYR 118

Query: 224 SKLEVLLQQLR 256
            ++  L  ++R
Sbjct: 119 IRMRKLQLKVR 129


>03_05_0615 + 26137785-26138593,26139307-26141368
          Length = 956

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 68  KVVHLVNYTHTDLPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWRSKLEVL 241
           K+  L    + D+ R IR+ ++ +T  LS     LLK   +E   +++K WR+K+  L
Sbjct: 14  KLATLAEQKYGDV-RRIRREITFLTDELSSMNALLLKLADMEELDSQLKEWRNKVREL 70


>12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179
          Length = 528

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 62  ARKVV--HLVNYTHTDLPRNIRQGMSIVTKHLSY-TAEA 169
           AR VV  +L    HT LPR +  G S+V  HL Y T EA
Sbjct: 200 ARVVVLANLYLLEHTRLPRALLDGTSLVALHLFYFTVEA 238


>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
            5184024-5184143,5184247-5184375,5184466-5184591,
            5185550-5185667,5186471-5186680,5186788-5187100,
            5187467-5187560,5187760-5187868,5188322-5188593,
            5188684-5188811,5188977-5189211,5189794-5189982,
            5190069-5190349,5190431-5190698,5190719-5190961,
            5191598-5191680,5192484-5192493
          Length = 1366

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 250  VAATSKTYLEHLAIFLAGNEEREKIAPRSAYEQRDDVSSING 375
            VAAT    L +L  FL G+E+R  + PR    QR  +S I G
Sbjct: 1010 VAATPDLMLGYLDFFLGGDEKRPDLPPR--LHQRLPMSLIFG 1049


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,008
Number of Sequences: 37544
Number of extensions: 388465
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)