Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0449
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25)        31   1.1  
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)          29   4.5  
SB_24435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_30511| Best HMM Match : Transposase_20 (HMM E-Value=8.3e-25)
          Length = 317

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/46 (21%), Positives = 27/46 (58%)
 Frame = +2

Query: 104 LPRNIRQGMSIVTKHLSYTAEALLKSVPVETAITEIKGWRSKLEVL 241
           +P+ +   + ++ KHL    + + + +  +  ++E+K WR+K ++L
Sbjct: 154 MPKELHSSIKLLLKHLEKEIDKITQKI--DLLVSEVKHWRTKTKIL 197


>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 334 TVAQSSPAPRYRPRIWLNAPS---KFWMWPQLLQQDLKFASPSLYFSDCRLHG 185
           T + SSP+P+Y+   W  +PS   K   W   L Q   F S SLY    RL G
Sbjct: 111 TTSWSSPSPKYKTTSW-TSPSPQYKTTSWSSPLPQQTTFLS-SLYHIIGRLSG 161


>SB_42892| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-06)
          Length = 812

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = -2

Query: 375 TVNGRHVVSLLVSRPWRNLLPLLVTGQEYG*MLQVSFGCGRNCCSRTSSLLLHPFISVIA 196
           T+NG   V L  S    +++ L  T +E     +VS G    C   T  + L PF   I+
Sbjct: 624 TINGSVTVYLTASTGTYSIVELY-TFKESVVSAEVS-GLQLECS--TVEVALEPFTCFIS 679

Query: 195 VSTGTDLSNASAVYDKCFV--TIDMP*RMFLGRS 100
           V+TG+++S  +++ D+  V   +D P  M  G S
Sbjct: 680 VTTGSNISLETSLNDEAPVIDAMDSPLTMVAGPS 713


>SB_24435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 155 YTAEALLKSVPVETAITEIKGWRSKLEVLLQQLRPHPKLTWSI 283
           YT   + + + +   I +++ W S  E +L+ L+ HPK+  +I
Sbjct: 113 YTLVVIFEKITI-ALIVQLQFWESVREFILKPLKGHPKMEVAI 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,331,242
Number of Sequences: 59808
Number of extensions: 462306
Number of successful extensions: 1108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)