Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0449
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U53141-7|AAA96109.1|   82|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 162 QRHYSSLYPWRRQSLK*RDGEANLRSCCSSCGHIQNLLGAFSHILGR*RGAGEDCATVGL 341
           Q H+S+L PWR+ + + R+ E  L +      H+QN+L       G  +  G  CA   L
Sbjct: 17  QEHHSNLLPWRKIAKECRNIE-ELENGQIDLVHLQNVLKEIRESHGSIKIIGTFCAASNL 75


>Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical
           protein R09D1.3 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = +2

Query: 323 LRHGRLTSKETTCLPLTVSINFRVFAFV-KA*SKTLELSRYIRHNDDY*SQAIMINIFTL 499
           ++H     K+ + + L +    R++  V KA     E+ R +   D+       ++ +T+
Sbjct: 287 MKHYTCELKKPSMINLVIPFYVRMWKNVQKAIDNRTEVFRNVELKDNEVEGRSQLSRYTV 346

Query: 500 ENG*NFKLQHSS--NFLRTRYICLIKTKIFFTLKLKVIVKI 616
           E+  + +L   S  N  +T Y+  +KT+ FFT + +  +K+
Sbjct: 347 EHE-DMELSPESWDNATQTPYVLDLKTRTFFTYENEKSIKV 386


>U53141-7|AAA96109.1|   82|Caenorhabditis elegans Hypothetical
           protein C14C11.7 protein.
          Length = 82

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 346 ARKPTVAQSSPAPRYRPRIWLNAP 275
           A  P  AQ +PAP  +P+ +++AP
Sbjct: 42  APPPPAAQQAPAPAEQPKFYISAP 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,679,588
Number of Sequences: 27780
Number of extensions: 335028
Number of successful extensions: 811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)