Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0449
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11700.1 68418.m01367 glycine-rich protein predicted protein,...    30   1.6  
At4g32920.1 68417.m04685 glycine-rich protein                          29   2.8  
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta...    28   6.6  

>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
            Arabidopsis thaliana
          Length = 1411

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 250  VAATSKTYLEHLAIFLAGNEEREKIAPR 333
            VAATS   L +L  FL G+E+R  + PR
Sbjct: 1056 VAATSDLMLAYLDFFLGGDEKRTDLPPR 1083


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 250  VAATSKTYLEHLAIFLAGNEEREKIAPR 333
            VAAT    L HL  FL G+E+R  + P+
Sbjct: 1053 VAATPDLMLAHLDFFLGGDEKRSDLPPQ 1080


>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam domains PF00226:
           DnaJ domain and PF00096: Zinc finger, C2H2 type
          Length = 630

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  SKKGRASRQLYTHRPSKKHPSRHVDCYEAFVVY 159
           SKK ++ +Q   H  SKKH  +  +  E+F  Y
Sbjct: 314 SKKFKSEKQWKNHEQSKKHKEKVAELRESFTDY 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,080
Number of Sequences: 28952
Number of extensions: 310241
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)