Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0448
(702 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55806 Cluster: PREDICTED: similar to CG4447-PA;... 126 7e-28
UniRef50_Q9VSW4 Cluster: CG4447-PA; n=5; Diptera|Rep: CG4447-PA ... 124 2e-27
UniRef50_UPI00015B4B50 Cluster: PREDICTED: similar to GA18189-PA... 116 7e-25
UniRef50_UPI0000DB7122 Cluster: PREDICTED: similar to CG4447-PA;... 100 4e-20
UniRef50_Q96E11 Cluster: Ribosome recycling factor, mitochondria... 81 3e-14
UniRef50_Q6GMJ7 Cluster: Mitochondrial ribosome recycling factor... 71 4e-11
UniRef50_Q9RU82 Cluster: Ribosome recycling factor; n=2; Deinoco... 58 2e-07
UniRef50_A6GAJ7 Cluster: Ribosome recycling factor; n=2; Bacteri... 55 2e-06
UniRef50_Q46293 Cluster: Ribosome recycling factor; n=18; Bacter... 55 2e-06
UniRef50_P91478 Cluster: Uncharacterized protein T20F5.3; n=3; C... 52 1e-05
UniRef50_Q6U200 Cluster: Ribosome recycling factor; n=1; Helicob... 52 1e-05
UniRef50_Q4FM67 Cluster: Ribosome recycling factor; n=2; Candida... 52 2e-05
UniRef50_O51147 Cluster: Ribosome recycling factor; n=3; Borreli... 52 2e-05
UniRef50_A0Q0R7 Cluster: Ribosome recycling factor; n=8; Bacteri... 51 3e-05
UniRef50_O82853 Cluster: Ribosome recycling factor; n=45; Proteo... 50 4e-05
UniRef50_A6VUS5 Cluster: Ribosome recycling factor; n=33; Proteo... 50 7e-05
UniRef50_O83613 Cluster: Ribosome recycling factor; n=2; Bacteri... 50 7e-05
UniRef50_P61308 Cluster: Ribosome recycling factor; n=3; Candida... 50 7e-05
UniRef50_Q5FPZ4 Cluster: Ribosome recycling factor; n=74; Bacter... 49 1e-04
UniRef50_Q9PIR0 Cluster: Ribosome recycling factor; n=28; Epsilo... 49 1e-04
UniRef50_A7S3V4 Cluster: Predicted protein; n=1; Nematostella ve... 49 1e-04
UniRef50_P61302 Cluster: Ribosome recycling factor; n=36; Bacter... 48 2e-04
UniRef50_A6EUT8 Cluster: Ribosome recycling factor; n=2; Gammapr... 48 2e-04
UniRef50_A6EM17 Cluster: Ribosome releasing factor; n=1; unident... 48 2e-04
UniRef50_P0A808 Cluster: Ribosome recycling factor; n=59; Gammap... 48 2e-04
UniRef50_Q7XY97 Cluster: Ribosome recycling factor; n=2; cellula... 48 3e-04
UniRef50_Q9X1B9 Cluster: Ribosome recycling factor; n=5; Bacteri... 48 3e-04
UniRef50_Q7WJ91 Cluster: Ribosome recycling factor; n=60; Bacter... 48 3e-04
UniRef50_Q88VJ7 Cluster: Ribosome recycling factor; n=94; Bacter... 46 7e-04
UniRef50_A4ECK2 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A5GSA4 Cluster: Ribosome recycling factor; n=6; cellula... 45 0.002
UniRef50_Q9Z7K6 Cluster: Ribosome recycling factor; n=7; Chlamyd... 45 0.002
UniRef50_Q8GRF5 Cluster: Ribosome recycling factor; n=34; Gammap... 45 0.002
UniRef50_Q92J72 Cluster: Ribosome recycling factor; n=15; Alphap... 44 0.003
UniRef50_Q831V2 Cluster: Ribosome recycling factor; n=19; Bacter... 44 0.003
UniRef50_Q6NQM0 Cluster: At3g01800; n=8; Magnoliophyta|Rep: At3g... 44 0.004
UniRef50_Q3A398 Cluster: Ribosome recycling factor; n=4; Bacteri... 43 0.006
UniRef50_Q2GCI7 Cluster: Ribosome recycling factor; n=1; Neorick... 43 0.006
UniRef50_Q014Z6 Cluster: COG0233: Ribosome recycling factor; n=2... 43 0.008
UniRef50_Q8EQV0 Cluster: Ribosome recycling factor; n=40; Bacter... 43 0.008
UniRef50_A6DHK3 Cluster: Ribosome releasing factor; n=1; Lentisp... 42 0.011
UniRef50_Q98MB8 Cluster: Ribosome recycling factor; n=4; Alphapr... 42 0.011
UniRef50_Q2S6J3 Cluster: Ribosome recycling factor; n=1; Salinib... 41 0.026
UniRef50_Q7VD62 Cluster: Ribosome recycling factor; n=30; Cyanob... 41 0.026
UniRef50_A7H725 Cluster: Ribosome recycling factor precursor; n=... 41 0.034
UniRef50_O66928 Cluster: Ribosome recycling factor; n=2; Aquifex... 41 0.034
UniRef50_A7CYY7 Cluster: Ribosome recycling factor; n=1; Opituta... 40 0.059
UniRef50_Q55G90 Cluster: Putative uncharacterized protein; n=1; ... 40 0.059
UniRef50_UPI0000F1DE0F Cluster: PREDICTED: similar to Mitochondr... 40 0.078
UniRef50_A5UUU9 Cluster: Ribosome recycling factor; n=4; Bacteri... 40 0.078
UniRef50_Q9M1X0 Cluster: Ribosome recycling factor, chloroplast ... 39 0.10
UniRef50_Q3ZZC4 Cluster: Ribosome recycling factor; n=3; Dehaloc... 39 0.14
UniRef50_Q1E595 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_A7TJC1 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_Q6BLC3 Cluster: Ribosomal recycling factor, mitochondri... 39 0.14
UniRef50_Q1Q2J2 Cluster: Similar to ribosome recycling factor; n... 38 0.18
UniRef50_Q8R5Z9 Cluster: Ribosome recycling factor; n=4; Bacteri... 38 0.18
UniRef50_UPI000065FD2A Cluster: Novel protein similar to mitocho... 38 0.32
UniRef50_Q7UTH0 Cluster: Ribosome recycling factor; n=4; Plancto... 37 0.42
UniRef50_Q6CTR7 Cluster: Ribosomal recycling factor, mitochondri... 37 0.55
UniRef50_Q8D2G5 Cluster: Ribosome recycling factor; n=1; Wiggles... 36 0.73
UniRef50_Q47S50 Cluster: Ribosome recycling factor; n=2; Actinom... 36 1.3
UniRef50_UPI00015A6A91 Cluster: UPI00015A6A91 related cluster; n... 34 2.9
UniRef50_A1THV8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q54MF7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q9FNL5 Cluster: Similarity to guanylate binding protein... 34 3.9
UniRef50_UPI000045BC6B Cluster: hypothetical protein Npun0200340... 33 9.0
>UniRef50_UPI0000D55806 Cluster: PREDICTED: similar to CG4447-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG4447-PA - Tribolium castaneum
Length = 262
Score = 126 bits (303), Expect = 7e-28
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +2
Query: 257 FPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKD 436
FPQ IP ALKAI SG+NLNPQQDGTTLF+P+PKVT EHRE LAK+AK ++IKCRD ++D
Sbjct: 150 FPQAIPAALKAIEKSGMNLNPQQDGTTLFIPIPKVTTEHRENLAKSAKTMFIKCRDGIRD 209
Query: 437 IQNENIKKMKKQTGVSEDLIFN 502
+QN+ +K +KK+ VSED+ N
Sbjct: 210 VQNKQVKSLKKKDKVSEDMARN 231
Score = 105 bits (252), Expect = 1e-21
Identities = 44/84 (52%), Positives = 68/84 (80%)
Frame = +3
Query: 18 KVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYEL 197
KV +N + LSE++ V+ +K + A++ +K D+ KHLS+R+TTGS+++IPV+ +GK + L
Sbjct: 70 KVHVNESQLSEIVNVESLKTQMQKAVDLLKEDYVKHLSVRTTTGSVESIPVELDGKTHSL 129
Query: 198 QELAQIVRKNPKTIVINFSLFPKS 269
QELAQI+RKNPKT+VIN S+FP++
Sbjct: 130 QELAQIIRKNPKTLVINMSVFPQA 153
>UniRef50_Q9VSW4 Cluster: CG4447-PA; n=5; Diptera|Rep: CG4447-PA -
Drosophila melanogaster (Fruit fly)
Length = 254
Score = 124 bits (299), Expect = 2e-27
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
++ FPQ IP+ LKAI SG+NLNPQQDGTTLF+P+PKVTKEHRE L+KNAK L++K RDA
Sbjct: 140 MIGFPQTIPDVLKAIEKSGMNLNPQQDGTTLFIPIPKVTKEHRENLSKNAKALFVKYRDA 199
Query: 428 LKDIQNENIKKMKKQTGVSEDLIF 499
++ +QNE+I+K+KKQ + +D F
Sbjct: 200 IRGVQNEHIRKLKKQPELGKDDAF 223
Score = 97.1 bits (231), Expect = 4e-19
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 18 KVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYEL 197
KVEIN L E++ D + + ++ MK DF KHLS+RST+G+IDT+ +K +G+E+EL
Sbjct: 63 KVEINEQQLREILNFDGLNSQMQKSVMQMKEDFVKHLSLRSTSGAIDTLRIKVDGQEHEL 122
Query: 198 QELAQIVRKNPKTIVINFSLFPKS 269
QELAQI RKNPKTI++N FP++
Sbjct: 123 QELAQISRKNPKTIIVNMIGFPQT 146
>UniRef50_UPI00015B4B50 Cluster: PREDICTED: similar to GA18189-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA18189-PA - Nasonia vitripennis
Length = 240
Score = 116 bits (278), Expect = 7e-25
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +2
Query: 254 SFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALK 433
SFP IP LKAI SGLN+NPQQ+GTTL++P+PKVTKEHRE L+KNAK +YI+ RD +K
Sbjct: 126 SFPTAIPHILKAIQKSGLNINPQQEGTTLYLPIPKVTKEHRENLSKNAKAIYIRYRDEIK 185
Query: 434 DIQNENIKKMKKQTGVSEDLI 496
DI+++ IK +KK+ VSED I
Sbjct: 186 DIRSKAIKNLKKRKDVSEDSI 206
Score = 95.1 bits (226), Expect = 1e-18
Identities = 45/80 (56%), Positives = 62/80 (77%)
Frame = +3
Query: 24 EINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQE 203
++++ L EL+ VD + + S AIENMKADF K+L++RSTTGS++ IPVK + KEY++QE
Sbjct: 50 KLDLRELGELLDVDDLTSQMSQAIENMKADFIKNLTLRSTTGSLEQIPVKVDDKEYQIQE 109
Query: 204 LAQIVRKNPKTIVINFSLFP 263
LAQI RK PK I++N S FP
Sbjct: 110 LAQIARK-PKLIILNVSSFP 128
>UniRef50_UPI0000DB7122 Cluster: PREDICTED: similar to CG4447-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG4447-PA
- Apis mellifera
Length = 317
Score = 100 bits (239), Expect = 4e-20
Identities = 39/71 (54%), Positives = 58/71 (81%)
Frame = +2
Query: 254 SFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALK 433
+FPQ++P L+A+S S +NLNPQQ+GTT+++P+PK+TKEHRE L K AK + KC+D +
Sbjct: 147 AFPQIVPSILEALSKSQMNLNPQQEGTTIYIPIPKITKEHREVLTKMAKQYFNKCKDIIS 206
Query: 434 DIQNENIKKMK 466
DI+NE +K++K
Sbjct: 207 DIRNEYVKELK 217
>UniRef50_Q96E11 Cluster: Ribosome recycling factor, mitochondrial
precursor; n=28; Euteleostomi|Rep: Ribosome recycling
factor, mitochondrial precursor - Homo sapiens (Human)
Length = 262
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
+ SFP+ A+KAI SG+NLNP+ +GT + VP+P+VT+EHRE L K AK K +D+
Sbjct: 148 MASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDS 207
Query: 428 LKDIQNENIKKMKK-QTGVSEDLI 496
L+ ++ ++ K+KK + VSED I
Sbjct: 208 LRKVRTNSMNKLKKSKDTVSEDTI 231
Score = 62.1 bits (144), Expect = 1e-08
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 70 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 130 LNQISQISMKSPQLILVNMASFPE 153
>UniRef50_Q6GMJ7 Cluster: Mitochondrial ribosome recycling factor;
n=4; Deuterostomia|Rep: Mitochondrial ribosome recycling
factor - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 257
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
+ FP+ + +A+ S + LNP+ +GT + VPVPKVT+EHRE L K AK K +D+
Sbjct: 143 MTGFPEAMVAVTRALRESSMGLNPEVEGTIIRVPVPKVTREHRENLVKLAKQFSNKSKDS 202
Query: 428 LKDIQNENIKKMKK-QTGVSEDLI 496
L+ +++ I ++KK + VS+D I
Sbjct: 203 LRRVRSNAISQVKKSKDAVSDDTI 226
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/84 (33%), Positives = 59/84 (70%)
Frame = +3
Query: 18 KVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYEL 197
KV IN A++ ++I ++++K+ +A + +K DF+++LS+R++ G++D I V + ++ L
Sbjct: 66 KVNINAALVEDIISLEEVKEDMAAVLAALKDDFSRNLSVRTSPGALDHITVTTKDGKFPL 125
Query: 198 QELAQIVRKNPKTIVINFSLFPKS 269
+L QI K+P+ +V+N + FP++
Sbjct: 126 NQLGQISMKSPQLLVVNMTGFPEA 149
>UniRef50_Q9RU82 Cluster: Ribosome recycling factor; n=2;
Deinococcus|Rep: Ribosome recycling factor - Deinococcus
radiodurans
Length = 183
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
KAI S L LNP G T+F+ +P +T+E R+ L KNAK R A+++++ + ++
Sbjct: 82 KAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNLRKHALDEV 141
Query: 464 KKQTGVSEDLIFNG 505
KK G+ ED I G
Sbjct: 142 KKVEGLGEDEIKRG 155
>UniRef50_A6GAJ7 Cluster: Ribosome recycling factor; n=2;
Bacteria|Rep: Ribosome recycling factor - Plesiocystis
pacifica SIR-1
Length = 185
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
KAI +SGL LNP DG L VP+P +T+E R +L K K + + A++ + N+ +
Sbjct: 80 KAIMNSGLGLNPSSDGVVLRVPIPPLTEERRRSLVKQVKDQAEEAKIAIRSGRREGNDLL 139
Query: 455 KKMKKQTGVSEDLIFNGTNK 514
K +K +SED + G +K
Sbjct: 140 KGAEKDKEISEDELKRGLDK 159
>UniRef50_Q46293 Cluster: Ribosome recycling factor; n=18;
Bacteria|Rep: Ribosome recycling factor - Clostridium
perfringens
Length = 185
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ- 442
++ E KAI S L +NP DGT + + VP++T+E R+ L KN K + + + A++ I+
Sbjct: 74 MLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIRK 133
Query: 443 --NENIKKMKKQTGVSEDLIFNG 505
N+ +K KK+ ++ED + G
Sbjct: 134 DANDKVKNFKKEGTITEDEMKKG 156
>UniRef50_P91478 Cluster: Uncharacterized protein T20F5.3; n=3;
Caenorhabditis|Rep: Uncharacterized protein T20F5.3 -
Caenorhabditis elegans
Length = 238
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYI-KCRDALKD 436
P I A AI S LN+ PQQ+G L+V VP ++KE RE +A +AK + + + A+ +
Sbjct: 125 PSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASDAKGRILNEYKKAINE 184
Query: 437 IQNENIKKMKKQTGVSED 490
I +++ KK + D
Sbjct: 185 IYSKSDKKSSNEFSTRPD 202
Score = 32.7 bits (71), Expect = 9.0
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 111 DFAKHLSIRSTTGSIDTIPVKFE-GKEYELQELAQIVRKNPKTIVINFSLFPKSYR 275
+ +H S++ + + VK E GK+ L +A++ K+P I+INF P + +
Sbjct: 74 ELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARVTLKSPLMIMINFQDNPSAIK 129
>UniRef50_Q6U200 Cluster: Ribosome recycling factor; n=1;
Helicobacter mustelae|Rep: Ribosome recycling factor -
Helicobacter mustelae
Length = 139
Score = 52.0 bits (119), Expect = 1e-05
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
+AI + + +NP DG T+ + P +T+E R+ +AK+ K + K + A+++I+ N I
Sbjct: 46 RAIQEANIGVNPNNDGETIKLFFPPMTQEQRKEIAKDTKAMGEKAKIAIRNIRQDSNNQI 105
Query: 455 KKMKKQTGVSED 490
KK++K ++ED
Sbjct: 106 KKLEKDKNITED 117
>UniRef50_Q4FM67 Cluster: Ribosome recycling factor; n=2; Candidatus
Pelagibacter ubique|Rep: Ribosome recycling factor -
Pelagibacter ubique
Length = 183
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ-- 442
+P AI S L LNPQ DG + +PVP + +E R + K K + KC+ ++++I+
Sbjct: 73 VPLVDTAIKKSELGLNPQIDGQLIRLPVPDLNEERRTEIKKLIKSMGEKCKISIRNIRRE 132
Query: 443 -NENIKKMKKQTGVSED 490
N+++K + K+ +SED
Sbjct: 133 ANDDLKNLVKEKIISED 149
>UniRef50_O51147 Cluster: Ribosome recycling factor; n=3; Borrelia
burgdorferi group|Rep: Ribosome recycling factor -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 184
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVL----YIKCRDALKDIQNEN 451
+AI +S L++NP DG+ + + VP +T E R+ + K+AK + I R+ +D+ N+
Sbjct: 79 QAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRNIRQDLNNK- 137
Query: 452 IKKMKKQTGVSEDLI 496
+KK +K++ ++ED +
Sbjct: 138 VKKQEKESEITEDCL 152
>UniRef50_A0Q0R7 Cluster: Ribosome recycling factor; n=8;
Bacteria|Rep: Ribosome recycling factor - Clostridium
novyi (strain NT)
Length = 185
Score = 50.8 bits (116), Expect = 3e-05
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
KAI S L LNP DG+ + + +P++T+E R+ + K K + + + A++ I+ N+ I
Sbjct: 80 KAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKIGEESKIAIRSIRREGNDKI 139
Query: 455 KKMKKQTGVSED 490
K +KK ++ED
Sbjct: 140 KNLKKNNDITED 151
>UniRef50_O82853 Cluster: Ribosome recycling factor; n=45;
Proteobacteria|Rep: Ribosome recycling factor -
Pseudomonas aeruginosa
Length = 185
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNE---NI 454
KAI +S L LNP GTT+ VP+P +T+E R+ K A+ + R ++++I+ + +
Sbjct: 80 KAIMTSDLGLNPATAGTTIRVPMPALTEETRKGYTKQARAEAEQARVSVRNIRRDALAQL 139
Query: 455 KKMKKQTGVSED 490
K ++K+ +SED
Sbjct: 140 KDLQKEKEISED 151
>UniRef50_A6VUS5 Cluster: Ribosome recycling factor; n=33;
Proteobacteria|Rep: Ribosome recycling factor -
Marinomonas sp. MWYL1
Length = 185
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ- 442
++PE KAI S L LNP +G + +P+P +T+E R+ K AK R A+++I+
Sbjct: 74 LVPEIEKAIMKSDLGLNPATNGNLIRIPMPALTEETRKNYFKQAKNEAENGRIAIRNIRR 133
Query: 443 --NENIKKMKKQTGVSED 490
N ++K + K+ +SED
Sbjct: 134 DANGSLKDLVKEKEISED 151
>UniRef50_O83613 Cluster: Ribosome recycling factor; n=2;
Bacteria|Rep: Ribosome recycling factor - Treponema
pallidum
Length = 183
Score = 49.6 bits (113), Expect = 7e-05
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
+AI S L+LNP DG + + +P +T+E R+ L + A+ L + R A+++I+ E I++
Sbjct: 78 RAILKSKLSLNPSNDGKVIRLVIPPLTQERRKELVRQARALAEQARVAIRNIRREGIEEA 137
Query: 464 K---KQTGVSEDLI 496
K K+ +SED +
Sbjct: 138 KRGHKEGLLSEDAL 151
>UniRef50_P61308 Cluster: Ribosome recycling factor; n=3; Candidatus
Phytoplasma asteris|Rep: Ribosome recycling factor -
Onion yellows phytoplasma
Length = 184
Score = 49.6 bits (113), Expect = 7e-05
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN 445
+IP K + +S L + PQ DG + + PK T+E R+AL K + L K + A+++++
Sbjct: 77 LIPNIKKVLLASNLGITPQTDGLVVRLVFPKPTEERRKALMKEVEQLAEKTKVAIRNVRR 136
Query: 446 ENIKKMKK 469
E K+KK
Sbjct: 137 EGNDKIKK 144
>UniRef50_Q5FPZ4 Cluster: Ribosome recycling factor; n=74;
Bacteria|Rep: Ribosome recycling factor - Gluconobacter
oxydans (Gluconobacter suboxydans)
Length = 188
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN 445
V+ +AI SGL LNP DG T+ VP+P +T+E R LA+ A + +++ ++
Sbjct: 77 VVGAVERAIRDSGLGLNPSTDGQTVRVPIPALTEERRNELARAASRYAENGKISVRGVRR 136
Query: 446 ---ENIKKMKKQTGVSED 490
E K ++K++ +S+D
Sbjct: 137 DGMEQTKALEKKSEISQD 154
>UniRef50_Q9PIR0 Cluster: Ribosome recycling factor; n=28;
Epsilonproteobacteria|Rep: Ribosome recycling factor -
Campylobacter jejuni
Length = 185
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +2
Query: 287 AISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENIK 457
AI+++ + +NP DG ++ + P +T+E RE K AK + K + ++++I+ N+ +K
Sbjct: 81 AIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVK 140
Query: 458 KMKKQTGVSED 490
K++K +SED
Sbjct: 141 KLEKDKAISED 151
>UniRef50_A7S3V4 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 191
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 SFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALK 433
S P+ A +AI S +N P D TT+ + +PKVT+E+R+ L K A+ + + L+
Sbjct: 78 SSPKDTKAAAQAIKESRINFEPVVDNTTITISIPKVTQEYRQDLVKLARQACEQSKQNLR 137
Query: 434 DIQNENIKKMKK-QTGVSED 490
++ + + ++K + G SED
Sbjct: 138 RVRQKGMADVRKNKQGRSED 157
Score = 38.7 bits (86), Expect = 0.14
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 51 LIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVRKNP 230
L+ K+K + I+ +K D+ ++++ ++D I V + L ELA+I K
Sbjct: 10 LVDFSKIKANMESTIDKLKQDYTSKITVQILPDALDNIRVTTRSGKSTLAELAEIRMKGD 69
Query: 231 KTIVINFSLFPK 266
VI+ S PK
Sbjct: 70 NMFVIDMSSSPK 81
>UniRef50_P61302 Cluster: Ribosome recycling factor; n=36;
Bacteria|Rep: Ribosome recycling factor - Bdellovibrio
bacteriovorus
Length = 186
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ- 442
++ + +AI S L + P DG + + VP +T+E R+ LAK K + + R A++ +
Sbjct: 75 ILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAEEARVAVRMARR 134
Query: 443 --NENIKKMKKQTGVSED 490
N+ +KK++K VSED
Sbjct: 135 DANDEVKKLQKDKAVSED 152
>UniRef50_A6EUT8 Cluster: Ribosome recycling factor; n=2;
Gammaproteobacteria|Rep: Ribosome recycling factor -
Marinobacter algicola DG893
Length = 194
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKV----LYIKCRDALK 433
++P+ KAI S L LNP +G + +P+P +T+E R+ + K A+ + R+A +
Sbjct: 83 LLPKIEKAIMMSDLGLNPSNNGEVIRIPMPMLTEETRKEMVKQARADAEHGKVSVRNARR 142
Query: 434 DIQNENIKKMKKQTGVSED 490
D N +K++ K+ ++ED
Sbjct: 143 D-ANSTLKELLKEKDINED 160
>UniRef50_A6EM17 Cluster: Ribosome releasing factor; n=1;
unidentified eubacterium SCB49|Rep: Ribosome releasing
factor - unidentified eubacterium SCB49
Length = 192
Score = 48.0 bits (109), Expect = 2e-04
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN 445
+IPE K I + L NP +G ++ + VP +T+E R LAK AK + D+ ++N
Sbjct: 85 LIPEIEKGIHLANLGFNPMNNGESVIITVPPLTEERRRELAKQAKA---EAEDSKVGVRN 141
Query: 446 E--NIKKMKKQTGVSEDLIFN 502
+ N K VSEDL N
Sbjct: 142 DRKNANNEIKNLDVSEDLKAN 162
>UniRef50_P0A808 Cluster: Ribosome recycling factor; n=59;
Gammaproteobacteria|Rep: Ribosome recycling factor -
Shigella flexneri
Length = 185
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +2
Query: 272 PEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ--- 442
P KAI +S L LNP G+ + VP+P +T+E R+ L K + + R A+++++
Sbjct: 76 PAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDA 135
Query: 443 NENIKKMKKQTGVSED 490
N+ +K + K +SED
Sbjct: 136 NDKVKALLKDKEISED 151
>UniRef50_Q7XY97 Cluster: Ribosome recycling factor; n=2; cellular
organisms|Rep: Ribosome recycling factor - Griffithsia
japonica (Red alga)
Length = 230
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN- 445
I + +++ S + L P DG+T+ + +P++TKE R L K K + R A+++I+
Sbjct: 120 ISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIRRD 179
Query: 446 --ENIKKMKKQTGVSED 490
++IKK++K++ + +D
Sbjct: 180 AVDSIKKLEKKSELGKD 196
>UniRef50_Q9X1B9 Cluster: Ribosome recycling factor; n=5;
Bacteria|Rep: Ribosome recycling factor - Thermotoga
maritima
Length = 185
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
KAI++S L LNP DG + + P T E RE K AK + + + A+++I+ E +KK+
Sbjct: 80 KAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKI 139
Query: 464 KK 469
K+
Sbjct: 140 KE 141
>UniRef50_Q7WJ91 Cluster: Ribosome recycling factor; n=60;
Bacteria|Rep: Ribosome recycling factor - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 186
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
KAI S L LNP G T+ VP+P +T+E R L K K + A+++++ NE +
Sbjct: 81 KAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEAL 140
Query: 455 KKMKKQTGVSED 490
KK+ K +SED
Sbjct: 141 KKLVKDKEISED 152
>UniRef50_Q88VJ7 Cluster: Ribosome recycling factor; n=94;
Bacteria|Rep: Ribosome recycling factor - Lactobacillus
plantarum
Length = 187
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/67 (29%), Positives = 44/67 (65%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNE 448
+ E KAI +S L ++P DG+ + + +P++T+E R+ LAK+ K + + A+++++ +
Sbjct: 77 LKEIEKAILASDLGISPANDGSAIRLVIPQLTEERRKELAKDVKAEGERAKVAVRNVRRD 136
Query: 449 NIKKMKK 469
++ +KK
Sbjct: 137 AMEALKK 143
>UniRef50_A4ECK2 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 178
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN 445
+I +KAI +S L + P DGT + +P P T+E R L K + + + ++++I+
Sbjct: 70 LINAIVKAIGASDLGITPNSDGTVVRLPFPAPTEERRRELVKECREYAEQAKVSIRNIRR 129
Query: 446 ENIKKMKKQTGVSED 490
+ K+++ ++ED
Sbjct: 130 DFNNKLERDEELTED 144
>UniRef50_A5GSA4 Cluster: Ribosome recycling factor; n=6; cellular
organisms|Rep: Ribosome recycling factor - Synechococcus
sp. (strain RCC307)
Length = 179
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN---ENI 454
KAI S L L P DG + + +P +T+E R+ L K A + + AL++++ + I
Sbjct: 74 KAIGMSDLGLTPNNDGKLIRINIPPLTEERRKELCKIASKYAEEGKVALRNVRRDAIDQI 133
Query: 455 KKMKKQTGVSEDL 493
KK +K +SEDL
Sbjct: 134 KKREKDGELSEDL 146
>UniRef50_Q9Z7K6 Cluster: Ribosome recycling factor; n=7;
Chlamydiaceae|Rep: Ribosome recycling factor - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 180
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/77 (25%), Positives = 45/77 (58%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
K I ++ LNL P+ +G+ + + VP+ T ++R+ + K + + + +++I+ E K+
Sbjct: 78 KGIIAANLNLQPEVEGSIIRIKVPEPTADYRQEMIKQLRRKCEEAKINVRNIRREANDKL 137
Query: 464 KKQTGVSEDLIFNGTNK 514
KK + ++ED++ K
Sbjct: 138 KKDSALTEDVVKGNEKK 154
>UniRef50_Q8GRF5 Cluster: Ribosome recycling factor; n=34;
Gammaproteobacteria|Rep: Ribosome recycling factor -
Vibrio parahaemolyticus
Length = 185
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
KAI S L LNP GT + VP+P +T+E R+ L K + R A+++I+ N ++
Sbjct: 80 KAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDL 139
Query: 455 KKMKKQTGVSED 490
K + K +SED
Sbjct: 140 KALLKDKEISED 151
>UniRef50_Q92J72 Cluster: Ribosome recycling factor; n=15;
Alphaproteobacteria|Rep: Ribosome recycling factor -
Rickettsia conorii
Length = 186
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
K I+ + L L P DG + +P+P +T+E R AL K A + +L++I+ NE +
Sbjct: 81 KGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKISLRNIRRDGNEAL 140
Query: 455 KKMKKQTGVSED 490
KK++K +++D
Sbjct: 141 KKLEKDNVIAKD 152
>UniRef50_Q831V2 Cluster: Ribosome recycling factor; n=19;
Bacteria|Rep: Ribosome recycling factor - Enterococcus
faecalis (Streptococcus faecalis)
Length = 185
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN- 445
I + KAI S + ++P DG + + +P++T+E R+ LAK+ K + A+++++
Sbjct: 75 IADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVRRD 134
Query: 446 --ENIKKMKKQTGVSED 490
+ +KK +K ++ED
Sbjct: 135 AMDELKKAQKNGDITED 151
>UniRef50_Q6NQM0 Cluster: At3g01800; n=8; Magnoliophyta|Rep:
At3g01800 - Arabidopsis thaliana (Mouse-ear cress)
Length = 267
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAK 391
P + E KAI +S L LNP+ DG L +P +TKEH +A+ K
Sbjct: 156 PDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCK 199
>UniRef50_Q3A398 Cluster: Ribosome recycling factor; n=4;
Bacteria|Rep: Ribosome recycling factor - Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 185
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +2
Query: 263 QVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVL----YIKCRDAL 430
+++ + +AI + L LNP DG + + +P +T+E R+ + K + + + R A
Sbjct: 73 KLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSAR 132
Query: 431 KDIQNENIKKMKKQTGVSEDLIFNG 505
+D N+ +KK++K +SED + G
Sbjct: 133 RD-ANDGMKKLEKNKEISEDDLKRG 156
>UniRef50_Q2GCI7 Cluster: Ribosome recycling factor; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: Ribosome
recycling factor - Neorickettsia sennetsu (strain
Miyayama)
Length = 185
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = +2
Query: 287 AISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKMK 466
AI +S L +NP +G+ L +PVP +T+E R+ L K K + + A+++I+ + I ++K
Sbjct: 81 AILTSNLGMNPIVEGSVLRLPVPDLTEERRKELVKVLKKYGDRAKVAVRNIRRDAISRIK 140
>UniRef50_Q014Z6 Cluster: COG0233: Ribosome recycling factor; n=2;
Ostreococcus|Rep: COG0233: Ribosome recycling factor -
Ostreococcus tauri
Length = 529
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDI 439
P P KAI +S L L P+ L VP+P +T++ R+ + K A L + A ++I
Sbjct: 126 PSTKPSVEKAIMNSPLGLVPRATSDGLIVPIPAMTQDTRKEVCKLAHKLGETAKIAARNI 185
Query: 440 QNENIKKMKKQTGVSED 490
+++ +K +K+ SED
Sbjct: 186 RHKALKHIKR-AAASED 201
>UniRef50_Q8EQV0 Cluster: Ribosome recycling factor; n=40;
Bacteria|Rep: Ribosome recycling factor - Oceanobacillus
iheyensis
Length = 185
Score = 42.7 bits (96), Expect = 0.008
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ---NENI 454
KAI + L L+P DG + + +P +T+E R+ L K + + +++I+ N+ +
Sbjct: 80 KAIQKADLGLSPSSDGNIIRINIPALTQERRKDLVKVVGKYSEEAKVQIRNIRRDTNDQL 139
Query: 455 KKMKKQTGVSED 490
KKM+K ++ED
Sbjct: 140 KKMEKNGDLTED 151
>UniRef50_A6DHK3 Cluster: Ribosome releasing factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Ribosome releasing
factor - Lentisphaera araneosa HTCC2155
Length = 188
Score = 42.3 bits (95), Expect = 0.011
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ- 442
++P+ KA+ + + + P DG + +P+P++T++ R+ + K+ K + + +++I+
Sbjct: 77 ILPDIEKALMMANIGITPMNDGQLIRLPIPELTEDRRKDMVKDLKGKGEEHKINIRNIRR 136
Query: 443 --NENIKKMKKQTGVSED 490
N+ +KK K +SED
Sbjct: 137 EGNDYLKKALKDHELSED 154
>UniRef50_Q98MB8 Cluster: Ribosome recycling factor; n=4;
Alphaproteobacteria|Rep: Ribosome recycling factor -
Rhizobium loti (Mesorhizobium loti)
Length = 184
Score = 42.3 bits (95), Expect = 0.011
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNEN---I 454
+AI S L NP DGT L +P+P++ ++ R+ L K + R A + ++ + +
Sbjct: 79 RAIRESNLGFNPIVDGTNLRIPLPELNEQRRKELVKISHGYAENARVAARHVRRDGMDFL 138
Query: 455 KKMKKQTGVSED 490
KK +K +SED
Sbjct: 139 KKAEKDGVISED 150
>UniRef50_Q2S6J3 Cluster: Ribosome recycling factor; n=1;
Salinibacter ruber DSM 13855|Rep: Ribosome recycling
factor - Salinibacter ruber (strain DSM 13855)
Length = 189
Score = 41.1 bits (92), Expect = 0.026
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALA----KNAKVLYIKCRDALKDIQNEN 451
+ I + L LNP DG + +P+P +++E R+ L + A+ I R+ +D +NE
Sbjct: 84 RGIMKADLGLNPNNDGEKIRIPIPPLSEERRKELVETSRERAEETKISIRNIRRDAKNE- 142
Query: 452 IKKMKKQTGVSEDLIF 499
I+ + + SED+++
Sbjct: 143 IQNVVEAENFSEDVLY 158
>UniRef50_Q7VD62 Cluster: Ribosome recycling factor; n=30;
Cyanobacteria|Rep: Ribosome recycling factor -
Prochlorococcus marinus
Length = 182
Score = 41.1 bits (92), Expect = 0.026
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
KAIS S L P DG + + +P +T+E R+ K A + + +L++I+ + I+K+
Sbjct: 77 KAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKISLRNIRRDAIEKI 136
Query: 464 K 466
K
Sbjct: 137 K 137
>UniRef50_A7H725 Cluster: Ribosome recycling factor precursor; n=3;
Proteobacteria|Rep: Ribosome recycling factor precursor
- Anaeromyxobacter sp. Fw109-5
Length = 187
Score = 40.7 bits (91), Expect = 0.034
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAK 400
+IP KAI + L +NPQ D + VP+P +T+E R+ + K K
Sbjct: 76 LIPVIEKAIRDANLGVNPQSDKDLVRVPIPPLTEERRKEIVKQVK 120
>UniRef50_O66928 Cluster: Ribosome recycling factor; n=2; Aquifex
aeolicus|Rep: Ribosome recycling factor - Aquifex
aeolicus
Length = 184
Score = 40.7 bits (91), Expect = 0.034
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNE 448
+P KAI LNLNP G + V +P +T+E R L + + + R +++++ E
Sbjct: 78 VPAIEKAIREE-LNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRRE 136
Query: 449 NIKKMKKQTGVSED 490
+ +++ G+SED
Sbjct: 137 AKEMIEELEGISED 150
>UniRef50_A7CYY7 Cluster: Ribosome recycling factor; n=1;
Opitutaceae bacterium TAV2|Rep: Ribosome recycling
factor - Opitutaceae bacterium TAV2
Length = 181
Score = 39.9 bits (89), Expect = 0.059
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
K I + L NP DG + VP+P++++E R K A L + R +++++ + ++ +
Sbjct: 80 KGIQIANLGFNPNVDGNLIRVPLPEMSRERRLEFVKVANRLAEEGRVHVRNLRRDTLENV 139
Query: 464 KKQTGVSED 490
KK +SED
Sbjct: 140 KK-AKLSED 147
>UniRef50_Q55G90 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 263
Score = 39.9 bits (89), Expect = 0.059
Identities = 19/69 (27%), Positives = 39/69 (56%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKM 463
+A+++SGL LNPQ TT+ V +PK T++ R+ L K + + +++ + + + +
Sbjct: 162 RALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISEDAKVSIRRHRKDGMDIL 221
Query: 464 KKQTGVSED 490
K+ +D
Sbjct: 222 KRYKLTKDD 230
>UniRef50_UPI0000F1DE0F Cluster: PREDICTED: similar to Mitochondrial
ribosome recycling factor; n=2; Danio rerio|Rep:
PREDICTED: similar to Mitochondrial ribosome recycling
factor - Danio rerio
Length = 404
Score = 39.5 bits (88), Expect = 0.078
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +2
Query: 359 VTKEHREALAKNAKVLYIKCRDALKDIQNENIKKMKK-QTGVSEDLI 496
VT+EHRE LAK AK K +D+L+ +++ I ++KK + VS+D I
Sbjct: 327 VTREHRENLAKLAKQFSNKSKDSLRRVRSNAISQVKKSKDAVSDDTI 373
>UniRef50_A5UUU9 Cluster: Ribosome recycling factor; n=4;
Bacteria|Rep: Ribosome recycling factor - Roseiflexus
sp. RS-1
Length = 185
Score = 39.5 bits (88), Expect = 0.078
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN---ENI 454
KAI +S L + P DG + + +P++T+ R+ L K + + + AL++I+ E++
Sbjct: 80 KAIMNSELGITPTDDGRVIRLAIPQLTEARRKELTKLVRARVEESKIALRNIRREALEDL 139
Query: 455 KKMKKQTGVSED 490
+ ++ + +SED
Sbjct: 140 RDLEHEKMISED 151
>UniRef50_Q9M1X0 Cluster: Ribosome recycling factor, chloroplast
precursor; n=16; cellular organisms|Rep: Ribosome
recycling factor, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 275
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIK-- 457
KAI +S L + P DG + + +P +T + R+ L+K + + AL++I+ + +K
Sbjct: 170 KAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSY 229
Query: 458 -KMKKQTGVSED 490
K++K+ +SED
Sbjct: 230 DKLEKEKKLSED 241
>UniRef50_Q3ZZC4 Cluster: Ribosome recycling factor; n=3;
Dehalococcoides|Rep: Ribosome recycling factor -
Dehalococcoides sp. (strain CBDB1)
Length = 185
Score = 38.7 bits (86), Expect = 0.14
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +2
Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQN---ENI 454
KAI S L L P DG + + +P +++E R+ + K + + A+++++ + +
Sbjct: 80 KAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVRRDAMDEM 139
Query: 455 KKMKKQTGVSEDLIFNGTNK 514
KK++K +S+D + G+++
Sbjct: 140 KKLEKAKEISQDDLKRGSDQ 159
>UniRef50_Q1E595 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 291
Score = 38.7 bits (86), Expect = 0.14
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 257 FPQVIPEALKAISSSGLNLNPQQDGTT---LFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
F + I AL+A+ S L+LNPQ D L +P+P T+E R+ K+AK K +
Sbjct: 176 FIKPITSALQAVPS--LSLNPQPDPHNKLQLNLPIPPPTRESRDQAVKDAKAAMEKASAS 233
Query: 428 LKDIQNENIKKMK 466
+K+ + KK+K
Sbjct: 234 VKNARANMNKKLK 246
>UniRef50_A7TJC1 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 238
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQD---GTTLFVPVPKVTKEHREALAKNAKVLY-----IK 415
P+ + AI +GLNLNP++D L V +P T E R L K K+++
Sbjct: 122 PKDAKNVISAIMGAGLNLNPEKDPNNSQLLKVLLPPPTTESRMNLVKELKIVFESFKSSS 181
Query: 416 CRDALKDIQNENIKKMKK 469
R++L ++ + +K+MKK
Sbjct: 182 MRNSLASVRADILKEMKK 199
>UniRef50_Q6BLC3 Cluster: Ribosomal recycling factor, mitochondrial
precursor; n=2; Saccharomycetaceae|Rep: Ribosomal
recycling factor, mitochondrial precursor - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 257
Score = 38.7 bits (86), Expect = 0.14
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQDGT---TLFVPVPKVTKEHREALAKNAKVLY 409
P + + A+ S LN+NPQ D + TL VP+P +T E ++ AK K++Y
Sbjct: 136 PSNVKSIINAVLGSDLNMNPQIDPSNKQTLKVPLPPLTTESKKENAKQLKLVY 188
>UniRef50_Q1Q2J2 Cluster: Similar to ribosome recycling factor; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Similar to
ribosome recycling factor - Candidatus Kuenenia
stuttgartiensis
Length = 186
Score = 38.3 bits (85), Expect = 0.18
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ- 442
++ KAI S + LNP + TL + +P + +E R+ L+ K + +L++I+
Sbjct: 75 IVSNIEKAIIQSDIGLNPSVEAKTLRIVIPPLNEERRKKLSVTVKDFGESTKVSLRNIRQ 134
Query: 443 --NENIKKMKKQTGVSED 490
N+ K KK+ ++ED
Sbjct: 135 DSNKQADKEKKENILTED 152
>UniRef50_Q8R5Z9 Cluster: Ribosome recycling factor; n=4;
Bacteria|Rep: Ribosome recycling factor - Fusobacterium
nucleatum subsp. nucleatum
Length = 190
Score = 38.3 bits (85), Expect = 0.18
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHRE---ALAKN-AKVLYIKCRDALK 433
+I + KAI ++ + + P DG + + +P++T + R+ LAKN A+ I R+ K
Sbjct: 77 LISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNEAENGKIAIRNIRK 136
Query: 434 DIQNENIKKMK--KQTGVSED 490
DI N ++KK++ K+ +SED
Sbjct: 137 DI-NNHLKKLEKDKENPISED 156
>UniRef50_UPI000065FD2A Cluster: Novel protein similar to
mitochondrial ribosome recycling factor isoform 1
(LOC286423).; n=1; Takifugu rubripes|Rep: Novel protein
similar to mitochondrial ribosome recycling factor
isoform 1 (LOC286423). - Takifugu rubripes
Length = 180
Score = 37.5 bits (83), Expect = 0.32
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +2
Query: 356 KVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKMKK-QTGVSEDLI 496
+VT+EHRE LAK AK L K +++L+ +++ + + K+ + G SED +
Sbjct: 102 RVTREHRENLAKVAKQLANKAKESLRRVRSGAVTQAKRTKEGHSEDTV 149
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = +3
Query: 18 KVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGS 152
K+ IN A++ +++ + ++ +A + +K DF + LSIR++ G+
Sbjct: 16 KLNINAALVEDIVDLGALRAEMAAVVSALKDDFTRSLSIRTSLGN 60
>UniRef50_Q7UTH0 Cluster: Ribosome recycling factor; n=4;
Planctomycetaceae|Rep: Ribosome recycling factor -
Rhodopirellula baltica
Length = 186
Score = 37.1 bits (82), Expect = 0.42
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ-- 442
I + KAI + L LNPQ DG + + VP ++ E R+ + K L + + ++++I+
Sbjct: 76 IKDIEKAIVAGDLGLNPQNDGRVIRLNVPPLSGEVRKKMVSRIKELAEEAKVSIRNIRRD 135
Query: 443 -NENIKKMKKQTGVSED 490
N+ + +K ++ED
Sbjct: 136 ANKAAETAEKDKEMTED 152
>UniRef50_Q6CTR7 Cluster: Ribosomal recycling factor, mitochondrial
precursor; n=3; Saccharomycetales|Rep: Ribosomal
recycling factor, mitochondrial precursor -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 241
Score = 36.7 bits (81), Expect = 0.55
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQ---DGTTLFVPVPKVTKEHREALAKNAKVLY-----IK 415
P+ + AI ++GLNLNP++ + L V +P +T E R+A+ K+ K ++
Sbjct: 124 PKDTKNIVSAIMAAGLNLNPERIPNNDQQLKVSLPPITTETRQAVCKDLKKVFEDYKHSA 183
Query: 416 CRDALKDIQNENIKKMKKQTGVSEDL 493
+++L ++ E +K++K ++D+
Sbjct: 184 LKESLGHVRGEIMKELKHLQKKNDDV 209
>UniRef50_Q8D2G5 Cluster: Ribosome recycling factor; n=1;
Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis|Rep: Ribosome recycling factor -
Wigglesworthia glossinidia brevipalpis
Length = 185
Score = 36.3 bits (80), Expect = 0.73
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHR----EALAKNAKVLYIKCRDALK 433
+I + +AI SS L +NPQ + + PK+T+ R + + K A+ I R+ +
Sbjct: 74 IIKKIEQAILSSDLGVNPQIQENYIRIEFPKLTEARRFELIKLINKEAEQNIISIRNIRR 133
Query: 434 DIQNENIKKMKKQTGVSED 490
D NE IKK+ K + +D
Sbjct: 134 D-ANEKIKKLIKAKTIGKD 151
>UniRef50_Q47S50 Cluster: Ribosome recycling factor; n=2;
Actinomycetales|Rep: Ribosome recycling factor -
Thermobifida fusca (strain YX)
Length = 185
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 269 IPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQ-- 442
+P KAI S L +NP DG + V P++++E R+ K A+ R ++++++
Sbjct: 75 MPAIEKAIRESDLGVNPSNDGNIIRVVFPELSEERRKEYVKVARNKAEDGRTSVRNVRRQ 134
Query: 443 -NENIKKMKKQTGVSED 490
+ I K K + ED
Sbjct: 135 AKDAIDKAVKAGEIGED 151
>UniRef50_UPI00015A6A91 Cluster: UPI00015A6A91 related cluster; n=1;
Danio rerio|Rep: UPI00015A6A91 UniRef100 entry - Danio
rerio
Length = 384
Score = 34.3 bits (75), Expect = 2.9
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Frame = -3
Query: 694 LLVFIEKMHGIFS*IYIMH--IILFINNTKLFPQTPTSQLIQHIWHHKY-FSLLIDIFHT 524
L I MH +F+ +YIMH I ++++ + +Q+ + + + F+L I +F
Sbjct: 16 LFAIIYIMHPLFAFVYIMHHSICIYLHYASFYLHIFHCLCLQYAFFYLHLFTLCIILFAI 75
Query: 523 RHLFVRSVKY*IFRYTSLFLH--------FLYVFILYVFECIPTLYVQ-HLSILSQC 380
++ SV + Y S +LH F +++I++ F CI Y +L + + C
Sbjct: 76 VYIIYHSVCINL-HYASFYLHLFTLCIFLFAFIYIMHHFICIYLHYSSFYLRLFTLC 131
>UniRef50_A1THV8 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium vanbaalenii PYR-1|Rep: Putative
uncharacterized protein - Mycobacterium vanbaalenii
(strain DSM 7251 / PYR-1)
Length = 878
Score = 34.3 bits (75), Expect = 2.9
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 156 DTIPVKFEGKEYELQELAQIVRKNPKTIV 242
D +PVKF G+E + Q+++QI+R+N ++
Sbjct: 34 DDLPVKFHGRERDAQKISQIIRENDVVVL 62
>UniRef50_Q54MF7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1234
Score = 34.3 bits (75), Expect = 2.9
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 233 NDSNKLLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYI 412
N+S KL S P + + K + L+LNP D L+ + + K + N KV+Y
Sbjct: 715 NESVKLQSMPLISKISKKELYLKALDLNPNSD-ARLYNVLAGIIKPNETVKLLNDKVIYT 773
Query: 413 KCRDALKDIQNE 448
K LK IQ E
Sbjct: 774 KKDLFLKSIQLE 785
>UniRef50_Q9FNL5 Cluster: Similarity to guanylate binding protein;
n=9; Magnoliophyta|Rep: Similarity to guanylate binding
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 1060
Score = 33.9 bits (74), Expect = 3.9
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 18 KVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYEL 197
K+ + SE D++K+RC AA ++A A L+ ++ T ++ + K E + +
Sbjct: 748 KIRMEQKYRSEFQRFDEVKERCKAA--EIEAKRATELADKARTDAVTSQKEKSESQRLAM 805
Query: 198 QELAQIVR 221
+ LAQI R
Sbjct: 806 ERLAQIER 813
>UniRef50_UPI000045BC6B Cluster: hypothetical protein Npun02003402;
n=1; Nostoc punctiforme PCC 73102|Rep: hypothetical
protein Npun02003402 - Nostoc punctiforme PCC 73102
Length = 1141
Score = 32.7 bits (71), Expect = 9.0
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Frame = +2
Query: 236 DSNKLLSFPQVIPEALKAISSSGLNLN---PQQDGTTLFVP--VPKVTKEHREALAK--- 391
DSN S ++IPE ++++ SG+ ++ PQQD T+ VP V + R L K
Sbjct: 252 DSNFTNSEEELIPEVSESLNLSGIPVSQTPPQQDIQTVQVPSIVDNKSSVSRTNLIKGNL 311
Query: 392 -NAKVLYIKCRDALKDIQNENIK-KMKKQTGVSEDLI 496
AK + L++ ++ NI K+++ T + DLI
Sbjct: 312 IQAKEILPTLNSLLQEEESPNINTKLEEITAIEADLI 348
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,386,315
Number of Sequences: 1657284
Number of extensions: 12949515
Number of successful extensions: 33016
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 31895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32984
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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