Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0448
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    29   0.49 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   4.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.9  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   7.9  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   7.9  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = -3

Query: 637 IILFINNTKLFPQTPTSQLIQHIWHHKYFSLLIDIFHTRHLFVRSVKY*IFRYTSLFLHF 458
           I++   N +LF +     LI+  ++H +  +  D  +T   F       +F Y  L L  
Sbjct: 22  IVVVTKNLELFKKYDDINLIKEAYNHVHKLIQKDERYTAVFFAHDST--VFSYLGLSLKA 79

Query: 457 LYVFILYVFECIPTLYVQHLSILSQ 383
            Y    Y+ + +  +YV H   +S+
Sbjct: 80  YYGMDYYLHKNVKAVYVIHTDWMSK 104


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 359 VTKEHREALAKNAKVLYIKCRDALKDIQNENIKKMKKQTG 478
           V +EH   L    K+LY    DAL  ++  N K +++ TG
Sbjct: 877 VIEEHNVLLLLAEKILYELPLDALDSVEQINSKSLRRVTG 916


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 305  LNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVL 406
            L+L+  + G     P+ +++ EH   LAKN  +L
Sbjct: 1092 LSLHESRSGRVYMSPLTEISPEHLARLAKNTTLL 1125


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 125 MFSKIRLHVFNSGTAAVFHLVYWYKFGENCHINFNFSALP 6
           M+S I  HVF+S   A   L+Y+ K G    +  +FS  P
Sbjct: 549 MYSWIYDHVFSSSDHAYESLIYYMKTGHK-QVVQSFSIFP 587


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 275 EALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENI 454
           E  K I S GL    +Q  +     + K+    RE   +NA   Y+K  +  KDI +E +
Sbjct: 108 ELAKPIMSKGLRSRTEQQES-----IGKLQDAIRELEEENAN--YVKAWNLRKDIFDETL 160

Query: 455 KKM 463
           K+M
Sbjct: 161 KQM 163


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 386 AKNAKVLYIKCRDALKDIQNENIKKMKKQTGVSEDLIFNGT 508
           +KN+   Y K   A  D +N NI K+      +++L  N T
Sbjct: 327 SKNSHSPYSKFSSAYPDAENSNISKINISIAGNKELYGNAT 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,050
Number of Sequences: 5004
Number of extensions: 60405
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)