Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0448
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0963 + 22949898-22949985,22950295-22950364,22951204-229512...    44   1e-04
04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818...    36   0.024
01_07_0380 + 43181564-43181639,43182053-43182218,43182494-431826...    29   4.7  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    28   6.2  
05_05_0018 - 21547649-21547875,21547973-21548187,21548831-215490...    28   6.2  

>07_03_0963 +
           22949898-22949985,22950295-22950364,22951204-22951270,
           22951361-22951456,22951796-22951893,22951921-22952089,
           22952899-22952940,22953967-22954023,22954116-22954166,
           22954284-22954340,22954522-22954539
          Length = 270

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = +2

Query: 284 KAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIK-- 457
           K I ++ L + P  DG  + V VP +T + R+ LAK    L  + + A+++I+ + IK  
Sbjct: 165 KTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAY 224

Query: 458 -KMKKQTGVSED 490
            K++K+  +SED
Sbjct: 225 DKLEKEKKLSED 236



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 63  DKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVRKNPKTIV 242
           D+ ++R   AIE ++ +F    + R+    +D I V++ G    L+ +AQI   +  +++
Sbjct: 73  DQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLL 132

Query: 243 I 245
           I
Sbjct: 133 I 133


>04_04_0333 -
           24481029-24481109,24481185-24481253,24481785-24481853,
           24481923-24481944,24482302-24482393,24482688-24482803,
           24482899-24483042,24483287-24483476
          Length = 260

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 287 AISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNENIKKMK 466
           AI SS L +NP  DG  +   +P +TKE+ +AL K         + +++  + + +  +K
Sbjct: 158 AIISSPLGINPTPDGNRIIANIPPLTKENIQALCKVVTKSAEDFKQSIRRARQKALDTIK 217

Query: 467 KQ-TGVSED 490
           K  +G+ +D
Sbjct: 218 KSASGMPKD 226


>01_07_0380 +
           43181564-43181639,43182053-43182218,43182494-43182695,
           43182789-43182949,43183079-43183172,43183250-43183462,
           43184917-43185135,43185458-43185661
          Length = 444

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +2

Query: 272 PEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDALKDIQNEN 451
           P  L   +S  +NL        L   V +V   H EA  + A VL  KCR   K+ + + 
Sbjct: 32  PSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCR--YKEAEGDY 89

Query: 452 IKKMKKQTGVS 484
            K ++ + G S
Sbjct: 90  SKYLELKPGSS 100


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 51   LIPVDKMKDRCSAAIENMKADFAKHLSIRSTTG----SIDTIPVKFEGKEYELQEL 206
            +I  D +K      +EN+     ++L++RS  G    SI+++  + +GK   L EL
Sbjct: 1928 MIDFDNLKQNKDELMENLHVLSEENLNLRSVVGSLESSIESLQTELDGKTKALMEL 1983


>05_05_0018 -
           21547649-21547875,21547973-21548187,21548831-21549096,
           21549534-21549657,21549946-21550041,21550179-21550294,
           21550374-21550455,21550574-21550728,21550819-21551001,
           21551114-21551305,21551389-21551564,21551676-21551729,
           21552076-21552147,21552255-21552582
          Length = 761

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 21  VEINMAVLSELIPVDKMKDRCSAAIENMK 107
           +E  M +LS L P+D  KDR +AA++ ++
Sbjct: 198 LEDAMPLLSFLAPIDTCKDRIAAALDTLR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,979
Number of Sequences: 37544
Number of extensions: 334953
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)