Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0448
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_47821| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_11698| Best HMM Match : DUF1435 (HMM E-Value=5.5) 29 4.8
SB_29332| Best HMM Match : PAN (HMM E-Value=0.039) 28 6.4
SB_25292| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_28162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 28 6.4
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/88 (25%), Positives = 41/88 (46%)
Frame = +3
Query: 3 KR*GTKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEG 182
K+ G + + + L+ K+K + I+ +K D+ ++++ ++D I V
Sbjct: 575 KKAGGTLMFDPELAEGLVDFSKIKANMESTIDKLKQDYTSKITVQILPDALDNIRVTTRS 634
Query: 183 KEYELQELAQIVRKNPKTIVINFSLFPK 266
+ L ELA+I K VI+ S PK
Sbjct: 635 GKSTLAELAEIRMKGDNMFVIDMSSSPK 662
>SB_47821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 266 VIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTK 367
+IP LKA+ LN + G TL+V VPK+++
Sbjct: 576 IIPLGLKAVHRVTLNPSTASPGETLYVAVPKLSE 609
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 164 TSKIRGQRI*TTRTSSDCKKES*NDSNKLLSFPQVIPEALKAISSSGLNLNPQQDGTTLF 343
TS+ + I T R SDC S NDS+ ++ + P+ALK + + P +
Sbjct: 56 TSRYKSNSIDTNRDDSDCIDISRNDSD-CIATVETTPKALKPVETIPTVSTPVETNPLAL 114
Query: 344 VPVPKV 361
PV +
Sbjct: 115 KPVETI 120
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 481 YTSLFLHFLYVFILYVFECIPTLYVQHLSILSQCFPVLLC 362
+ +F + VF +C+ +Y +++S CF VLLC
Sbjct: 78 FPGVFRYVFPVFFALFAQCLRFVYPVFFAMISLCFYVLLC 117
>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Frame = +1
Query: 247 TSLFSPSHTGGLESHQ*FWSKFKSTTRW-------NYTVC 345
T + SPSH + S + W K + T W NYTVC
Sbjct: 249 TMIASPSHRNNIYSSRNVWPKHNAITYWIESIDTLNYTVC 288
>SB_11698| Best HMM Match : DUF1435 (HMM E-Value=5.5)
Length = 264
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 200 RTSSDCKKES*NDSNKLLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHRE 379
+T S KKE N LLSFP V+ L I + ++ Q +G VPK + +E
Sbjct: 25 KTRSMAKKEKENIETVLLSFPWVVDRLLSHIKQEAVKVS-QDNG------VPKTLEGIQE 77
Query: 380 ALAKNAK 400
+++ A+
Sbjct: 78 LVSEQAR 84
>SB_29332| Best HMM Match : PAN (HMM E-Value=0.039)
Length = 340
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 171 KFEGKEYE-LQELAQIVRKNPKTIVINFSLFPK 266
K++ K+ L E ++ +PK I INFSLF K
Sbjct: 38 KYDAKKVNNLLECLKLCNTDPKCITINFSLFDK 70
>SB_25292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 454 YVFILYVFECIPTLYVQHLSILSQCFPVLLCDFRHRHKQCSS 329
++ I Y+ +++ + + C VLLC+ RH +K S
Sbjct: 50 WIIITYILLTAIADICRYILVAAACITVLLCNSRHHNKMAES 91
>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 60 VDKMKD-RCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVR 221
VDK+ + C ++ + AD K L I D P+ EGKE E+ ++VR
Sbjct: 813 VDKVVEWSCDNRVQ-LNADKCKELRISFARQERDFPPISIEGKEIEVVTSVKLVR 866
>SB_28162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 60 VDKMKD-RCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYEL 197
VDK+ + C ++ +KAD K L I D P+ EGKE E+
Sbjct: 146 VDKVVEWSCDNRVQ-LKADKCKELRISFARQERDFTPISIEGKEIEV 191
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 454 YVFILYVFECIPTLYVQHLSILSQCFPVLLCDFRHRHKQCSS 329
++ I Y+ +++ + + C VLLC+ RH +K S
Sbjct: 1142 WIIITYILLTAIADICRYILVAAACITVLLCNSRHHNKMAES 1183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,860,128
Number of Sequences: 59808
Number of extensions: 416473
Number of successful extensions: 1129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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