Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0448
(702 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC013049-1|AAH13049.1| 262|Homo sapiens mitochondrial ribosome ... 81 4e-15
AL162424-12|CAI14713.1| 218|Homo sapiens mitochondrial ribosome... 81 4e-15
AL162424-10|CAI14711.1| 262|Homo sapiens mitochondrial ribosome... 81 4e-15
Z83848-4|CAI95712.1| 262|Homo sapiens novel protein similar to ... 69 2e-11
AL162424-11|CAI14712.1| 124|Homo sapiens mitochondrial ribosome... 63 8e-10
BC053604-1|AAH53604.1| 201|Homo sapiens mitochondrial ribosome ... 62 2e-09
AL162424-9|CAI14708.1| 158|Homo sapiens mitochondrial ribosome ... 62 2e-09
AL162424-8|CAI14707.1| 153|Homo sapiens mitochondrial ribosome ... 62 2e-09
>BC013049-1|AAH13049.1| 262|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 262
Score = 81.0 bits (191), Expect = 4e-15
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
+ SFP+ A+KAI SG+NLNP+ +GT + VP+P+VT+EHRE L K AK K +D+
Sbjct: 148 MASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDS 207
Query: 428 LKDIQNENIKKMKK-QTGVSEDLI 496
L+ ++ ++ K+KK + VSED I
Sbjct: 208 LRKVRTNSMNKLKKSKDTVSEDTI 231
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 70 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 130 LNQISQISMKSPQLILVNMASFPE 153
>AL162424-12|CAI14713.1| 218|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 218
Score = 81.0 bits (191), Expect = 4e-15
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
+ SFP+ A+KAI SG+NLNP+ +GT + VP+P+VT+EHRE L K AK K +D+
Sbjct: 104 MASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDS 163
Query: 428 LKDIQNENIKKMKK-QTGVSEDLI 496
L+ ++ ++ K+KK + VSED I
Sbjct: 164 LRKVRTNSMNKLKKSKDTVSEDTI 187
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 26 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 85
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 86 LNQISQISMKSPQLILVNMASFPE 109
>AL162424-10|CAI14711.1| 262|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 262
Score = 81.0 bits (191), Expect = 4e-15
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
+ SFP+ A+KAI SG+NLNP+ +GT + VP+P+VT+EHRE L K AK K +D+
Sbjct: 148 MASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDS 207
Query: 428 LKDIQNENIKKMKK-QTGVSEDLI 496
L+ ++ ++ K+KK + VSED I
Sbjct: 208 LRKVRTNSMNKLKKSKDTVSEDTI 231
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 70 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 130 LNQISQISMKSPQLILVNMASFPE 153
>Z83848-4|CAI95712.1| 262|Homo sapiens novel protein similar to
mitochondrial ribosome recycling factor isoform 1 (LOC
protein.
Length = 262
Score = 68.9 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYIKCRDA 427
+ SFP+ A+KAI SG+NLNP+ +GT + VP+P+V +EHRE L K AK K +
Sbjct: 148 MASFPEFTVAAIKAIRESGMNLNPEVEGTLIRVPIPQVIREHREMLVKLAKQNTNKATYS 207
Query: 428 LKDIQNENIKKMKKQTGVSEDLIFNGT 508
L+ + + K+KK S+D + GT
Sbjct: 208 LRKVCTNAMNKLKK----SKDTVSEGT 230
Score = 52.0 bits (119), Expect = 2e-06
Identities = 26/84 (30%), Positives = 50/84 (59%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V I+ A + ++I ++++ + + IE K +F K L+I ++ GS+D I V +
Sbjct: 70 TRVNISAAFVEDIINLEEVNEEMKSVIEARKDNFNKTLNIGTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L ++ QI K P+ I++N + FP+
Sbjct: 130 LNQIRQISVKLPQLILVNMASFPE 153
>AL162424-11|CAI14712.1| 124|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 124
Score = 63.3 bits (147), Expect = 8e-10
Identities = 28/88 (31%), Positives = 58/88 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 26 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 85
Query: 195 LQELAQIVRKNPKTIVINFSLFPKSYRR 278
L +++QI K+P+ I++N + FP++ ++
Sbjct: 86 LNQISQISMKSPQLILVNMASFPETMKQ 113
>BC053604-1|AAH53604.1| 201|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 201
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 70 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 130 LNQISQISMKSPQLILVNMASFPE 153
Score = 46.4 bits (105), Expect = 1e-04
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 248 LLSFPQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTK 367
+ SFP+ A+KAI SG+NLNP+ +GT + VP+P+ K
Sbjct: 148 MASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQSAK 187
>AL162424-9|CAI14708.1| 158|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 158
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 70 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 130 LNQISQISMKSPQLILVNMASFPE 153
>AL162424-8|CAI14707.1| 153|Homo sapiens mitochondrial ribosome
recycling factor protein.
Length = 153
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/84 (33%), Positives = 55/84 (65%)
Frame = +3
Query: 15 TKVEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYE 194
T+V IN A++ ++I ++++ + + IE +K +F K L+IR++ GS+D I V +
Sbjct: 70 TRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLA 129
Query: 195 LQELAQIVRKNPKTIVINFSLFPK 266
L +++QI K+P+ I++N + FP+
Sbjct: 130 LNQISQISMKSPQLILVNMASFPE 153
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,932,625
Number of Sequences: 237096
Number of extensions: 1984832
Number of successful extensions: 3388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3388
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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