Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0448
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80442-2|AAB37664.2| 238|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein. 31 1.1
AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeri... 31 1.1
AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying de... 31 1.1
AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying de... 31 1.1
Z70035-10|CAA93871.2| 473|Caenorhabditis elegans Hypothetical p... 29 4.3
Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF188748-1|AAF00545.1| 198|Caenorhabditis elegans putative tyro... 29 4.3
Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z19153-1|CAA79546.1| 374|Caenorhabditis elegans Hypothetical pr... 28 5.6
U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine rece... 28 7.4
AF016416-2|AAB65274.2| 243|Caenorhabditis elegans Hypothetical ... 27 9.8
>U80442-2|AAB37664.2| 238|Caenorhabditis elegans Hypothetical
protein T20F5.3 protein.
Length = 238
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 PQVIPEALKAISSSGLNLNPQQDGTTLFVPVPKVTKEHREALAKNAKVLYI-KCRDALKD 436
P I A AI S LN+ PQQ+G L+V VP ++KE RE +A +AK + + + A+ +
Sbjct: 125 PSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKMASDAKGRILNEYKKAINE 184
Query: 437 IQNENIKKMKKQTGVSED 490
I +++ KK + D
Sbjct: 185 IYSKSDKKSSNEFSTRPD 202
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 111 DFAKHLSIRSTTGSIDTIPVKFE-GKEYELQELAQIVRKNPKTIVINFSLFPKSYR 275
+ +H S++ + + VK E GK+ L +A++ K+P I+INF P + +
Sbjct: 74 ELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARVTLKSPLMIMINFQDNPSAIK 129
>U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein.
Length = 355
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 126 LSIRSTTGSIDTIPVKFEGKEYELQELAQIVRK 224
++I+S ++DT+ +KF + ELQE A +VR+
Sbjct: 79 MAIQSMIRAMDTLDIKFGNESEELQEKAAVVRE 111
>AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 355
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 126 LSIRSTTGSIDTIPVKFEGKEYELQELAQIVRK 224
++I+S ++DT+ +KF + ELQE A +VR+
Sbjct: 79 MAIQSMIRAMDTLDIKFGNESEELQEKAAVVRE 111
>AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying
defective protein 30,isoform b protein.
Length = 303
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 126 LSIRSTTGSIDTIPVKFEGKEYELQELAQIVRK 224
++I+S ++DT+ +KF + ELQE A +VR+
Sbjct: 27 MAIQSMIRAMDTLDIKFGNESEELQEKAAVVRE 59
>AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying
defective protein 30,isoform a protein.
Length = 355
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 126 LSIRSTTGSIDTIPVKFEGKEYELQELAQIVRK 224
++I+S ++DT+ +KF + ELQE A +VR+
Sbjct: 79 MAIQSMIRAMDTLDIKFGNESEELQEKAAVVRE 111
>Z70035-10|CAA93871.2| 473|Caenorhabditis elegans Hypothetical
protein R09D1.12 protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 21 VEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEY 191
V++N+AV + P D+ +D+ + KH ++ + G+I T K G+EY
Sbjct: 190 VQVNVAVKKMVDPTDEKQDKLIYDEIKLMCAIGKHPNVLAIVGAI-TKKEKVSGREY 245
>Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical
protein B0001.3b protein.
Length = 575
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 206 SSDCKKES*NDSNKLLSFPQVIPEALKAISSSGLNLNPQQDG 331
S D E+ N+SNKL S+ +P L+ + SGL+ P ++G
Sbjct: 452 SDDSDNEASNNSNKLSSYSWPMPPILQRPAVSGLS-TPSRNG 492
>Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical
protein B0001.3a protein.
Length = 591
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 206 SSDCKKES*NDSNKLLSFPQVIPEALKAISSSGLNLNPQQDG 331
S D E+ N+SNKL S+ +P L+ + SGL+ P ++G
Sbjct: 468 SDDSDNEASNNSNKLSSYSWPMPPILQRPAVSGLS-TPSRNG 508
>AF188748-1|AAF00545.1| 198|Caenorhabditis elegans putative
tyrosine kinase receptorR09D1.12 protein.
Length = 198
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 21 VEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEY 191
V++N+AV + P D+ +D+ + KH ++ + G+I T K G+EY
Sbjct: 133 VQVNVAVKKMVDPTDEKQDKLIYDEIKLMCAIGKHPNVLAIVGAI-TKKEKVSGREY 188
>Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical
protein C01G10.2 protein.
Length = 343
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 128 QMFSKIRLHVFNSGTAAVFHLVYWYKFGENCHINFNFSAL 9
++FS RL VFN G + +W F N NFN S L
Sbjct: 235 RLFSS-RLVVFNHGLVFSARVSHWNNFSFNSKYNFNSSNL 273
>Z19153-1|CAA79546.1| 374|Caenorhabditis elegans Hypothetical
protein C38C10.1 protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 134 YRQMFSKIRLHVFNSGTAAVFHLVYWYKFGENCHINFNFSALP 6
+ F+ + + +FN GT+ ++L Y + +G+ C + F P
Sbjct: 51 FNMAFADLLIALFNVGTSWTYNLYYDWWYGDLCTLTSFFGIAP 93
>U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein20 protein.
Length = 286
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 672 CMAYFLKYILCILFYS-LTTQSYFHKHL 592
CMAY + ++C FY L YFH L
Sbjct: 125 CMAYAIAIVMCTTFYELLECYLYFHADL 152
>AF016416-2|AAB65274.2| 243|Caenorhabditis elegans Hypothetical
protein F29A7.4 protein.
Length = 243
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 551 LASNRYFSHKAFI--CSFR*ILNLQIHQSVSSFSL 453
LA + FSH FI C+F IL+ Q+H + F L
Sbjct: 14 LALSHVFSHLVFISLCAFSFILHQQLHNLIGWFVL 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,330
Number of Sequences: 27780
Number of extensions: 334069
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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