Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0448
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  VEINMAVLSELIPVDKMKDRCSAAIENMKADFAKHLS 131
           + I++ +LSE I  +K  D+C   + N    F+K LS
Sbjct: 108 ISIDVKMLSECINANKSTDKCENGL-NFIICFSKLLS 143


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 96  ENMKADFAKHLSIRSTTGSIDTIP 167
           +N++ D A+H+   S T S +T+P
Sbjct: 417 KNIREDDARHIPHASVTDSENTVP 440


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = +3

Query: 63  DKMKDRCSAAIENMKADFAKHLSIRSTTGSIDTIPVKFEGKEYELQELAQIVR 221
           DK+KD      E +  D   H  +  + G   +    +EG  +++ +  ++ R
Sbjct: 670 DKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSR 722


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 636 LFYSLTTQSYFHKHLLPN 583
           LF+S   + +FH  ++PN
Sbjct: 120 LFFSNEKEGHFHNIIMPN 137


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 636 LFYSLTTQSYFHKHLLPN 583
           LF+S   + +FH  ++PN
Sbjct: 120 LFFSNEKEGHFHNIIMPN 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,300
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)